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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen06g001170.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | C2H2 | ||||||||
Protein Properties | Length: 325aa MW: 37019.6 Da PI: 6.1566 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12 | 0.00063 | 78 | 100 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F+++ L H +H Sopen06g001170.1 78 FQCKGCKKIFNSHQALGGHRASH 100 89**************9999888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.51E-7 | 77 | 100 | No hit | No description |
Pfam | PF13912 | 3.0E-7 | 78 | 102 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.66 | 78 | 105 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.47 | 78 | 100 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 80 | 100 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 3.51E-7 | 165 | 192 | No hit | No description |
Pfam | PF13912 | 3.1E-12 | 169 | 193 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.29 | 170 | 192 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.307 | 170 | 192 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 172 | 192 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 325 aa Download sequence Send to blast |
MLGNNQSTSD HDHDHVDVEK SEYYYYGPDV KDKQHCSREE EEDLANCLVM LSNKSYDLSD 60 NSNKEAKNKA KEVEKGMFQC KGCKKIFNSH QALGGHRASH KKVKGCYAAK LDDNIKDDDD 120 NNNNDDDNND IDDDSIISPS DLILHQESND FQSQSPTSSS SFSRKRSRVH QCSICHRVFS 180 SGQALGGHKR CHWLTSSLPE TTFMPTFQEI QYHNQEQVLY NKPLFINNSH QPLDLNFPEQ 240 LGNPTEVGLK LHNNPFEHEG PRSQLQLWTE DTNQNHKRKD SLCREENRKA KEAKLSNLKD 300 VNLDKGSSSW LQVGIGPTPD IFATL |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975445 | 0.0 | HG975445.1 Solanum pennellii chromosome ch06, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015079055.1 | 0.0 | zinc finger protein ZAT1-like | ||||
TrEMBL | A0A3Q7GR95 | 0.0 | A0A3Q7GR95_SOLLC; Uncharacterized protein | ||||
TrEMBL | M1CY44 | 0.0 | M1CY44_SOLTU; Uncharacterized protein | ||||
STRING | Solyc06g005180.1.1 | 0.0 | (Solanum lycopersicum) | ||||
STRING | PGSC0003DMT400077263 | 0.0 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1910 | 22 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G17180.1 | 6e-23 | C2H2-like zinc finger protein |