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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Sopen05g033930.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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| Family |
NAC |
| Protein Properties |
Length: 386aa MW: 43468.9 Da PI: 4.9843 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sopen05g033930.1 | genome | spenn | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 166.7 | 7.7e-52 | 17 | 144 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91
l+pGfrFhPtdeelv +yL++kv gk++++ ++++e+d+yk+eP dL ++vk+++ ewyfFs+ dkky +g+r nrat +gyWkatgkd++
Sopen05g033930.1 17 LAPGFRFHPTDEELVRYYLRRKVCGKPFRF-QAVTEIDVYKSEPCDLAeySSVKSRDMEWYFFSPVDKKYCNGSRLNRATGQGYWKATGKDRH 108
579*************************99.88**************84348888999*********************************** PP
NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
+ + k++++g+kktLvf++grap+g++t+Wvmheyrl
Sopen05g033930.1 109 ISH-KSQAIGMKKTLVFHSGRAPDGKRTNWVMHEYRL 144
**9.999****************************98 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009555 | Biological Process | pollen development |
| GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem |
| GO:0005730 | Cellular Component | nucleolus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 386 aa
Download sequence Send
to blast |
MEQEGSKGAV TVAPTSLAPG FRFHPTDEEL VRYYLRRKVC GKPFRFQAVT EIDVYKSEPC 60
DLAEYSSVKS RDMEWYFFSP VDKKYCNGSR LNRATGQGYW KATGKDRHIS HKSQAIGMKK 120
TLVFHSGRAP DGKRTNWVMH EYRLADKELE KAGIVQDSFV LCRIFQKSGL GPPTGDRYAP 180
FIEEEWDDDS AVLPGGETED DAVNGVDARV ESNDLDQDAP PKIACDNENV IELQSLPFAC 240
KREISEEPEL LSLSQNKKSK HDVPSSSRAN GSEDSTITSH DPENMMTTKD YPLALLGFPL 300
LESFEPKDPQ PSNPLTFDSS NLEKSVPPGY LKFISNLETE ILNVSMERET LKIEVMRAQA 360
MINVLQSRID LLTKENEDMR KLVRGG
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 3swm_A | 3e-50 | 16 | 167 | 19 | 168 | NAC domain-containing protein 19 |
| 3swm_B | 3e-50 | 16 | 167 | 19 | 168 | NAC domain-containing protein 19 |
| 3swm_C | 3e-50 | 16 | 167 | 19 | 168 | NAC domain-containing protein 19 |
| 3swm_D | 3e-50 | 16 | 167 | 19 | 168 | NAC domain-containing protein 19 |
| 3swp_A | 3e-50 | 16 | 167 | 19 | 168 | NAC domain-containing protein 19 |
| 3swp_B | 3e-50 | 16 | 167 | 19 | 168 | NAC domain-containing protein 19 |
| 3swp_C | 3e-50 | 16 | 167 | 19 | 168 | NAC domain-containing protein 19 |
| 3swp_D | 3e-50 | 16 | 167 | 19 | 168 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Transcriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC050 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). Regulates siRNA-dependent post-transcriptional gene silencing (PTGS) through SGS3 expression modulation (PubMed:28207953). Required during pollen development (PubMed:19237690). {ECO:0000269|PubMed:19237690, ECO:0000269|PubMed:24045019, ECO:0000269|PubMed:25578968, ECO:0000269|PubMed:26617990, ECO:0000269|PubMed:28207953}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced by type III effector proteins (TTEs) secreted by the pathogenic bacteria P.syringae pv. tomato DC3000 during basal defense. {ECO:0000269|PubMed:16553893}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | BT014626 | 0.0 | BT014626.1 Lycopersicon esculentum clone 134129R, mRNA sequence. |
| Publications
? help Back to Top |
- Higgins JD,Ferdous M,Osman K,Franklin FC
The RecQ helicase AtRECQ4A is required to remove inter-chromosomal telomeric connections that arise during meiotic recombination in Arabidopsis.
Plant J., 2011. 65(3): p. 492-502
[PMID:21265901] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Zhang S, et al.
C-terminal domains of a histone demethylase interact with a pair of transcription factors and mediate specific chromatin association.
Cell Discov, 2019.
[PMID:26617990] - Butel N,Le Masson I,Bouteiller N,Vaucheret H,Elmayan T
sgs1: a neomorphic nac52 allele impairing post-transcriptional gene silencing through SGS3 downregulation.
Plant J., 2017. 90(3): p. 505-519
[PMID:28207953] - Elmayan T, et al.
Arabidopsis mutants impaired in cosuppression.
Plant Cell, 1998. 10(10): p. 1747-58
[PMID:9761800]
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