PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen05g033920.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

NAC

Protein Properties

Length: 544aa MW: 60589.5 Da PI: 4.458

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen05g033920.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	170	7.5e-53	10	137	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 ++pGfrFhPtdeelv +yL++k+ gk+l++ ++i+e+diykvePwdLp +++k+++ ewyfFs d+k+ +g ++nrat++gyWk+tgkd++ Sopen05g033920.1 10 MAPGFRFHPTDEELVRYYLRRKIVGKPLRF-DAISEIDIYKVEPWDLPgmSRLKTRDLEWYFFSVLDRKHGNGAKTNRATERGYWKTTGKDRA 101 579***********************99.99***********6347788888******************************* PP NAM 92 vlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 v++ k+++vg+kktLvf++grapkge+t+Wvmhey+l Sopen05g033920.1 102 VHH-KSKVVGMKKTLVFHSGRAPKGERTNWVMHEYKL 137 .999***************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	6.41E-62	10	160	IPR003441	NAC domain
PROSITE profile	PS51005	58.18	10	160	IPR003441	NAC domain
Pfam	PF02365	6.8E-28	12	137	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009644	Biological Process	response to high light intensity
GO:0009962	Biological Process	regulation of flavonoid biosynthetic process
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 544 aa Download sequence Send to blast
MESKGSAKLM APGFRFHPTD EELVRYYLRR KIVGKPLRFD AISEIDIYKV EPWDLPGMSR 60 LKTRDLEWYF FSVLDRKHGN GAKTNRATER GYWKTTGKDR AVHHKSKVVG MKKTLVFHSG 120 RAPKGERTNW VMHEYKLIDE ELQKAGIVQD ALVLCRVFQK SGAGPKNGEK YGAPFVEEEW 180 EDDELEIVPK EEAAEEVEFG DDIYLDGHDL EEILGADSPV NGAPLPLNCY SEGNASNSGE 240 TSNSFEEAQN WLQQPDEQES FDPAIQQINA DTNPVKHEFM SEPSNSMNTE DVDYLLDEPV 300 ITANDNLQFS DGAFLEASDL SRPIEVDTSG FDMLEDYLAF FDADDNFQSM GFNPPMMTGG 360 DDHVSDLASV EEKNIAEVND QPIAPSEEPD DQKKNVASSS KLEPSKFGSD YKYPFMKQTS 420 CMLGGIPAPP AFASEFPSKN AALRMNSSSE ASSSIHVTGF IRITNMTVSS NGMDGLVGKH 480 GNYNVILSLG FSQHGDSSAH LESAASFLPG KTISTVSWCW FYYLFLWVLI LSTTFKIGTL 540 IRAA

Sequence ? help Back to Top

Protein Sequence Length: 544 aa Download sequence Send to blast

MESKGSAKLM APGFRFHPTD EELVRYYLRR KIVGKPLRFD AISEIDIYKV EPWDLPGMSR  60
LKTRDLEWYF FSVLDRKHGN GAKTNRATER GYWKTTGKDR AVHHKSKVVG MKKTLVFHSG  120
RAPKGERTNW VMHEYKLIDE ELQKAGIVQD ALVLCRVFQK SGAGPKNGEK YGAPFVEEEW  180
EDDELEIVPK EEAAEEVEFG DDIYLDGHDL EEILGADSPV NGAPLPLNCY SEGNASNSGE  240
TSNSFEEAQN WLQQPDEQES FDPAIQQINA DTNPVKHEFM SEPSNSMNTE DVDYLLDEPV  300
ITANDNLQFS DGAFLEASDL SRPIEVDTSG FDMLEDYLAF FDADDNFQSM GFNPPMMTGG  360
DDHVSDLASV EEKNIAEVND QPIAPSEEPD DQKKNVASSS KLEPSKFGSD YKYPFMKQTS  420
CMLGGIPAPP AFASEFPSKN AALRMNSSSE ASSSIHVTGF IRITNMTVSS NGMDGLVGKH  480
GNYNVILSLG FSQHGDSSAH LESAASFLPG KTISTVSWCW FYYLFLWVLI LSTTFKIGTL  540
IRAA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-45	10	166	17	171	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-45	10	166	17	171	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-45	10	166	17	171	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-45	10	166	17	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-45	10	166	20	174	NAC domain-containing protein 19
3swm_B	2e-45	10	166	20	174	NAC domain-containing protein 19
3swm_C	2e-45	10	166	20	174	NAC domain-containing protein 19
3swm_D	2e-45	10	166	20	174	NAC domain-containing protein 19
3swp_A	2e-45	10	166	20	174	NAC domain-containing protein 19
3swp_B	2e-45	10	166	20	174	NAC domain-containing protein 19
3swp_C	2e-45	10	166	20	174	NAC domain-containing protein 19
3swp_D	2e-45	10	166	20	174	NAC domain-containing protein 19
4dul_A	2e-45	10	166	17	171	NAC domain-containing protein 19
4dul_B	2e-45	10	166	17	171	NAC domain-containing protein 19
Search in ModeBase

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00059	PBM	Transfer from AT5G04410	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975444	0.0	HG975444.1 Solanum pennellii chromosome ch05, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015076720.1	0.0	NAC domain-containing protein 78-like
TrEMBL	M1C572	0.0	M1C572_SOLTU; Uncharacterized protein
STRING	Solyc05g055470.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA3141	24	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G04410.1	1e-136	NAC domain containing protein 2