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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sopen05g033680.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
MYB |
Protein Properties |
Length: 188aa MW: 21500.8 Da PI: 5.5758 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sopen05g033680.1 | genome | spenn | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 28.7 | 3e-09 | 3 | 46 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
WT ++d+l+ ++ +++ + +W +Ia +++ g+t+ ++ ++
Sopen05g033680.1 3 TWTRDDDKLFEHGLVLYPENsadRWQLIADHVP-GKTADDIMAHY 46
7********************************.********999 PP
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2 | Myb_DNA-binding | 41.7 | 2.8e-13 | 97 | 141 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
+WT++E+ l++ + ++G+g+W++I+r + Rt+ q+ s+ qky
Sopen05g033680.1 97 PWTEDEHRLFLIGLDKYGKGDWRSISRNVVVSRTPTQVASHAQKY 141
8*******************************************9 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 188 aa
Download sequence Send
to blast |
MSTWTRDDDK LFEHGLVLYP ENSADRWQLI ADHVPGKTAD DIMAHYDDLV HDVYEIDSGR 60 IDLPSYTDDP VELEGDCQIT SGSNKKSNEI ERKKGTPWTE DEHRLFLIGL DKYGKGDWRS 120 ISRNVVVSRT PTQVASHAQK YFIRQQAMKK ERKRSSIHDI TTAVDTNPVP PQSSFQNQSG 180 SQNFNFAM
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Functional Description ? help
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Source |
Description |
UniProt | Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AJ243339 | 0.0 | AJ243339.1 Lycopersicon esculentum mRNA for I-box binding factor (LeMYBI gene). |