PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen05g032990.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family Dof
Protein Properties Length: 297aa    MW: 33386.7 Da    PI: 9.826
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen05g032990.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof122.61.3e-3877137262
            zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 
                       ++ alkcprC+stntkfCy+nny+lsqPr+fCk+CrryWt GGalrnvPvGgg+r+n+k+s
  Sopen05g032990.1  77 PDVALKCPRCESTNTKFCYFNNYNLSQPRHFCKTCRRYWTIGGALRNVPVGGGCRRNNKRS 137
                       56789****************************************************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074783.0E-3161130IPR003851Zinc finger, Dof-type
PfamPF027015.9E-3280135IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.25581135IPR003851Zinc finger, Dof-type
PROSITE patternPS01361083119IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MAFSSIPFYQ DPPNWHHEQG NHHQQQHLGV TNENSSELSP AVLPPPGAAP GGGGGPVGST  60
RSGSITERAR LSKITQPDVA LKCPRCESTN TKFCYFNNYN LSQPRHFCKT CRRYWTIGGA  120
LRNVPVGGGC RRNNKRSSSK RSRKSQIRSE RSRNVSISTS NSTNTITTPS HFPPPSTHLS  180
FFNTPFHNFN HFNSTQNGLN FGEIQPHEGD PTFVNQFRHQ QMQQFSFFSP LEQPSNLYPI  240
YSEFGINHHD LENVKVEENK SSTNSSQGMN LQRNNNLGVN QFWTNYNISS TSTSQLL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015075179.10.0dof zinc finger protein DOF3.6
TrEMBLA0A3Q7GMH21e-159A0A3Q7GMH2_SOLLC; Uncharacterized protein
STRINGSolyc05g054510.1.11e-160(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA8824419
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37590.11e-37DNA binding with one finger 2.4