PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen05g032880.2
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GATA
Protein Properties Length: 196aa    MW: 21403.5 Da    PI: 10.4196
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen05g032880.2genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.25.5e-193165135
              GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                      C+ CgttkTplWR gp g+k+LCnaCG++ rkk++
  Sopen05g032880.2 31 CADCGTTKTPLWRGGPAGPKSLCNACGIKSRKKRR 65
                      ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.4922561IPR000679Zinc finger, GATA-type
SMARTSM004017.2E-142575IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.47E-122665No hitNo description
Gene3DG3DSA:3.30.50.108.1E-153064IPR013088Zinc finger, NHR/GATA-type
CDDcd002023.81E-123065No hitNo description
PROSITE patternPS0034403156IPR000679Zinc finger, GATA-type
PfamPF003208.2E-173165IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MVDLSDKGLG SEEMSSGVTS PETSQSNVKT CADCGTTKTP LWRGGPAGPK SLCNACGIKS  60
RKKRRAFLGL NNEEKKSKKS VVVGHKNIEV QHHLNQSCSS SSNSDDSKSS NFVKNIVSSS  120
LKKKLLPFGK EEVVMQRPRS RSTQKRKLGE VEQAAFLLMA LSCGSFYTHG RMKIDKERKN  180
EKCCTLGSKS STLWVG
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00335DAPTransfer from AT3G06740Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004239796.11e-141GATA transcription factor 17-like isoform X2
RefseqXP_015076167.11e-141GATA transcription factor 17-like isoform X2
TrEMBLA0A3Q7GKJ21e-126A0A3Q7GKJ2_SOLLC; Uncharacterized protein
STRINGSolyc05g054400.2.11e-127(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.15e-32GATA transcription factor 15