PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen05g029350.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 445aa    MW: 49636.7 Da    PI: 6.4541
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen05g029350.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.000165269219
                      EETTTTEEESSHHHHHHH CS
           zf-C2H2  2 kCpdCgksFsrksnLkrH 19
                      +C++Cgk Fs++ ++  H
  Sopen05g029350.1 52 VCENCGKEFSSWKSFLEH 69
                      6**************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003551805171IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.44E-7192215No hitNo description
SMARTSM003550.13193215IPR015880Zinc finger, C2H2-like
PfamPF139121.3E-9193217IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.076193220IPR007087Zinc finger, C2H2
PROSITE patternPS000280195215IPR007087Zinc finger, C2H2
SuperFamilySSF576672.44E-7256283No hitNo description
SMARTSM003550.52261283IPR015880Zinc finger, C2H2-like
PfamPF139125.7E-13261284IPR007087Zinc finger, C2H2
PROSITE profilePS501579.328261283IPR007087Zinc finger, C2H2
PROSITE patternPS000280263283IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MRAHGIGDEG ANIDDDDPAS DWEDKFGGGV KGGNKRLYQL RTNPNRQKSN RVCENCGKEF  60
SSWKSFLEHG KCSSEDAESL VSSPCSEGED YINSGGRKGY GWSKRKRSLR TKIGTINSTT  120
STYPSSEDED LVLAKCLIDL ANAKVDLSLV EPEESCASAS KEEERARNPM NYLTPLVRPF  180
DNKAKGISNK GLFECKACKK VFNSHQALGG HRASHKKVKG CYAAKQDQLD DSLIDDNDMN  240
ITQDDQFTLQ GSKSMRKSKI HECSICHRVF STGQALGGHK RCHWITSNSP DSTSKFNFNG  300
HMDQINLRSN LRKSSDTLDL NMPISHDDMS RIRRDPMNPL SFEVSTEIHL HPWSSNPNEA  360
KEHSCSENYY LDETINNNNN NNNNNTNENN NIINGTIQNV EDDEADSKLK LAKLSELKDM  420
NKNSENPSHW LQVGIGPTTQ VGADP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015075612.10.0zinc finger protein ZAT4-like
TrEMBLA0A3Q7GIG40.0A0A3Q7GIG4_SOLLC; Uncharacterized protein
STRINGSolyc05g050860.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA19102243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.12e-28C2H2-like zinc finger protein