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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen05g028990.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | bHLH | ||||||||
Protein Properties | Length: 575aa MW: 63901.5 Da PI: 7.7722 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35.8 | 1.5e-11 | 428 | 474 | 4 | 55 |
HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 +h e+Er+RR+++N++f Lr ++P+ + K++Ka+ L A+ +I ++q Sopen05g028990.1 428 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAHITDMQ 474 799***********************66......***************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14215 | 1.9E-54 | 45 | 233 | IPR025610 | Transcription factor MYC/MYB N-terminal |
PROSITE profile | PS50888 | 16.056 | 424 | 473 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.37E-16 | 425 | 486 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.02E-12 | 427 | 478 | No hit | No description |
Pfam | PF00010 | 4.2E-9 | 428 | 474 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 1.2E-14 | 428 | 483 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.5E-15 | 430 | 479 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 575 aa Download sequence Send to blast |
MTMLWSDEDK TMVAAVLGTK AFDYLMSSLV SAECSLMAMG SDENLQNMLS DLVERPNASN 60 FSWNYAIFWQ ISRSKLGELV LGWGDGCCRE AREGEESELT RILNIRLADE AQQRMRKRVL 120 QKLHMFFGGT DEDNYVSGLD KVTDTEMFFL ASMYFSFPRG QGGPGKCFSA GKHVWLSDVM 180 RSSVDYCSRS FLMKSAGMQT VVLIPTDIGV VELGSVRTIP ESLELVNSIK SCFSSFLAQV 240 RAKQAAVVAE KKNGNNSVIP SSFPFDQSKE NPKIFGQNLE SGSTEFREKL VRRKPVDGPL 300 EMYRNGNRAP IINTQNGVRP VSWASFGNVK PGNSVELYSP QAPPNNLREF VNGGREELLL 360 NSLQHQKPGG MQIDFTNSRP VVSPVPTVES EHSDVEVSCK EKHAGPADER RPRKRGRKPA 420 NGREEPLNHV EAERQRREKL NQRFYALRAV VPNISKMDKA SLLGDAIAHI TDMQKRIRDA 480 EYKLERRGST SVDAADINIE AASDEVIVRA RCPLGTHPVA KVVEAFKETQ VSVVESKLAV 540 GNDTVYHTFV VKSSGPEQLT KEKLMAAFSG ESNSL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5gnj_A | 2e-26 | 422 | 481 | 2 | 61 | Transcription factor MYC2 |
5gnj_B | 2e-26 | 422 | 481 | 2 | 61 | Transcription factor MYC2 |
5gnj_E | 2e-26 | 422 | 481 | 2 | 61 | Transcription factor MYC2 |
5gnj_F | 2e-26 | 422 | 481 | 2 | 61 | Transcription factor MYC2 |
5gnj_G | 2e-26 | 422 | 481 | 2 | 61 | Transcription factor MYC2 |
5gnj_I | 2e-26 | 422 | 481 | 2 | 61 | Transcription factor MYC2 |
5gnj_M | 2e-26 | 422 | 481 | 2 | 61 | Transcription factor MYC2 |
5gnj_N | 2e-26 | 422 | 481 | 2 | 61 | Transcription factor MYC2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 409 | 417 | RRPRKRGRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975444 | 0.0 | HG975444.1 Solanum pennellii chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015074780.1 | 0.0 | transcription factor bHLH13-like | ||||
Swissprot | A0A3Q7HES4 | 0.0 | MTB2_SOLLC; Transcription factor MTB2 | ||||
TrEMBL | A0A0V0IRQ0 | 0.0 | A0A0V0IRQ0_SOLCH; Putative transcription factor bHLH13-like | ||||
STRING | Solyc05g050560.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3585 | 23 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01260.3 | 0.0 | bHLH family protein |
Publications ? help Back to Top | |||
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