PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen05g017290.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | NAC | ||||||||
Protein Properties | Length: 206aa MW: 23696.3 Da PI: 9.2992 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 72 | 1.6e-22 | 2 | 68 | 64 | 128 |
NAM 64 rdkkyatgkrknratksgyWkatgkdkevlskkgel..vglkktLvfykgrapkgektdWvmheyrl 128 r +ky+++ r+nr+tksg+Wkatg dk+v+s++++ +glkk Lv+y+g+a kg+ktdW+mhe+rl Sopen05g017290.1 2 RGRKYKNSVRPNRVTKSGFWKATGIDKPVYSSTTKCiiIGLKKCLVYYRGSAGKGTKTDWMMHEFRL 68 5799***************************84433459**************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 30.399 | 1 | 89 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 9.42E-27 | 2 | 89 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.0E-9 | 12 | 68 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MRGRKYKNSV RPNRVTKSGF WKATGIDKPV YSSTTKCIII GLKKCLVYYR GSAGKGTKTD 60 WMMHEFRLPL TSNTNQQAEV WTLCRIFKRS SSTYKRSSYN TQEVKHPIGD ASSKACSLES 120 DENSTDHDHS NSFRDMSFQH QNYNNYVAQM DETRNQQNPI PHESTFPSSS SISFWNTNST 180 QEDYLFGDHG NKWDDLKSIV DLATMM |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 8e-25 | 2 | 95 | 79 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 8e-25 | 2 | 95 | 79 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 8e-25 | 2 | 95 | 79 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 8e-25 | 2 | 95 | 79 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-24 | 2 | 95 | 82 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-24 | 2 | 95 | 82 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-24 | 2 | 95 | 82 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-24 | 2 | 95 | 82 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-24 | 2 | 95 | 82 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-24 | 2 | 95 | 82 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-24 | 2 | 95 | 82 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-24 | 2 | 95 | 82 | 174 | NAC domain-containing protein 19 |
4dul_A | 8e-25 | 2 | 95 | 79 | 171 | NAC domain-containing protein 19 |
4dul_B | 8e-25 | 2 | 95 | 79 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that binds to the 5'- RRYGCCGT-3' consensus core sequence. Central longevity regulator. Negative regulator of leaf senescence. Modulates cellular H(2)O(2) levels and enhances tolerance to various abiotic stresses through the regulation of DREB2A. {ECO:0000269|PubMed:22345491}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by H(2)O(2), paraquat, ozone, 3-aminotriazole and salt stress. {ECO:0000269|PubMed:22345491}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975444 | 0.0 | HG975444.1 Solanum pennellii chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027772841.1 | 1e-155 | transcription factor JUNGBRUNNEN 1-like isoform X1 | ||||
Refseq | XP_027772842.1 | 1e-155 | transcription factor JUNGBRUNNEN 1-like isoform X2 | ||||
Swissprot | Q9SK55 | 7e-50 | NAC42_ARATH; Transcription factor JUNGBRUNNEN 1 | ||||
TrEMBL | A0A3Q7GJY2 | 1e-149 | A0A3Q7GJY2_SOLLC; Uncharacterized protein | ||||
STRING | Solyc05g021090.2.1 | 1e-150 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1697 | 24 | 69 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43000.1 | 2e-44 | NAC domain containing protein 42 |