PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen05g009970.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | NF-YC | ||||||||
Protein Properties | Length: 135aa MW: 14973.5 Da PI: 10.8924 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 26.2 | 1.7e-08 | 23 | 101 | 19 | 96 |
NF-YC 19 helPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavt.rtdifdflvdiv 96 ++P+ari + lk+ + k++ a aPv+l+ e++ +e+ + + a++ k++ + i+ a+ + ++f d+ Sopen05g009970.1 23 LKFPVARIARFLKVGKYAKRVGAAAPVFLAAVLEYLAVEVLEFAGIAARNDKKTRITPRHIQLAIRfDKELYQFHRDVT 101 589**********************************************************999973567899999976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00414 | 2.1E-52 | 2 | 122 | IPR002119 | Histone H2A |
Gene3D | G3DSA:1.10.20.10 | 4.9E-46 | 8 | 120 | IPR009072 | Histone-fold |
CDD | cd00074 | 9.92E-51 | 13 | 117 | No hit | No description |
Pfam | PF00125 | 3.2E-15 | 13 | 89 | IPR007125 | Histone H2A/H2B/H3 |
PRINTS | PR00620 | 7.8E-41 | 13 | 35 | IPR002119 | Histone H2A |
SuperFamily | SSF47113 | 3.14E-35 | 14 | 117 | IPR009072 | Histone-fold |
PROSITE pattern | PS00046 | 0 | 21 | 27 | IPR032458 | Histone H2A conserved site |
PRINTS | PR00620 | 7.8E-41 | 42 | 57 | IPR002119 | Histone H2A |
PRINTS | PR00620 | 7.8E-41 | 57 | 70 | IPR002119 | Histone H2A |
PRINTS | PR00620 | 7.8E-41 | 71 | 85 | IPR002119 | Histone H2A |
Pfam | PF16211 | 4.7E-10 | 92 | 125 | IPR032454 | Histone H2A, C-terminal domain |
PRINTS | PR00620 | 7.8E-41 | 99 | 117 | IPR002119 | Histone H2A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000786 | Cellular Component | nucleosome | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 135 aa Download sequence Send to blast |
MADKGKNLGS YAKRRSRSSK AGLKFPVARI ARFLKVGKYA KRVGAAAPVF LAAVLEYLAV 60 EVLEFAGIAA RNDKKTRITP RHIQLAIRFD KELYQFHRDV TIPNGGVIQK VHKILLPDNK 120 SNTSKAVVAA QEEED |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5oy7_a | 3e-43 | 1 | 126 | 1 | 126 | Histone H2A |
5oy7_e | 3e-43 | 1 | 126 | 1 | 126 | Histone H2A |
5oy7_G | 3e-43 | 1 | 126 | 1 | 126 | Histone H2A |
5oy7_K | 3e-43 | 1 | 126 | 1 | 126 | Histone H2A |
5oy7_S | 3e-43 | 1 | 126 | 1 | 126 | Histone H2A |
5oy7_W | 3e-43 | 1 | 126 | 1 | 126 | Histone H2A |
5x0x_C | 3e-43 | 1 | 126 | 1 | 126 | Histone H2A |
5x0x_G | 3e-43 | 1 | 126 | 1 | 126 | Histone H2A |
6i84_Q | 3e-43 | 1 | 126 | 1 | 126 | Histone H2A type 1 |
6i84_V | 3e-43 | 1 | 126 | 1 | 126 | Histone H2A type 1 |
6j99_C | 3e-43 | 1 | 126 | 1 | 126 | Histone H2A |
6j99_G | 3e-43 | 1 | 126 | 1 | 126 | Histone H2A |
6n1z_B | 3e-43 | 1 | 126 | 1 | 126 | Histone H2A |
6n1z_E | 3e-43 | 1 | 126 | 1 | 126 | Histone H2A |
6o96_C | 3e-43 | 1 | 126 | 1 | 126 | Histone H2A |
6o96_G | 3e-43 | 1 | 126 | 1 | 126 | Histone H2A |
6om3_C | 3e-43 | 1 | 126 | 1 | 126 | Histone H2A |
6om3_G | 3e-43 | 1 | 126 | 1 | 126 | Histone H2A |
6om3_O | 3e-43 | 1 | 126 | 1 | 126 | Histone H2A |
6om3_S | 3e-43 | 1 | 126 | 1 | 126 | Histone H2A |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975444 | 1e-123 | HG975444.1 Solanum pennellii chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015075859.1 | 8e-94 | histone H2A-beta, sperm-like | ||||
Swissprot | O81826 | 2e-53 | H2A3_ARATH; Probable histone H2A.3 | ||||
TrEMBL | K4BYJ8 | 8e-80 | K4BYJ8_SOLLC; Histone H2A | ||||
STRING | Solyc05g014800.1.1 | 1e-80 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA164 | 6 | 9 |
Publications ? help Back to Top | |||
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