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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen05g007300.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | C2H2 | ||||||||
Protein Properties | Length: 525aa MW: 58893 Da PI: 6.3549 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.6 | 0.0004 | 460 | 482 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp C+++F++ L H r+H Sopen05g007300.1 460 HECPFCDRVFKSGQALGGHKRSH 482 78******************999 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 0.15 | 84 | 106 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.12 | 84 | 111 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 4.6E-7 | 85 | 108 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.09E-7 | 85 | 106 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 86 | 106 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.09E-7 | 379 | 406 | No hit | No description |
Pfam | PF13912 | 2.0E-8 | 384 | 408 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 6.2 | 384 | 406 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.515 | 384 | 411 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 386 | 406 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.5E-10 | 459 | 482 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.014 | 460 | 482 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.432 | 460 | 482 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 462 | 482 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 525 aa Download sequence Send to blast |
MEDNQDLNFV GDKKSLCGNS LGGDMRSHVV EGNVEKFESW SSRETPHQSK FDVGSHSGYG 60 LRENPKKTWR AVDSTFSPLP PQERVCQQCG KVFQSMKALC GHMACHSEKL VMDSHSDTET 120 DDDDNDDEEE EEEETKMKTR SLKTKRYKRL VVKPSNYCLV NNNNNNGVVN YGSSSVSEID 180 ELDQEEVVAK CLMMLSRDTG NWNGVNSVVE SSDNNSVVLE TKSSSTDMKF GRKDRLKCVY 240 NQNETPGTKK LSGLDVDQAE SESSDSGYFL DDNTIVESDI SVDGFNRNGN SKWSTSQMSH 300 AESGVDKGKG LNRTKKYPIE SRKDITAECD YDDYAIASYI DKCEPRKRMK DSSYHPELGN 360 KSVKKIKLGP KSSERCNAIQ KKKYECLNCK KSFNSYQALG GHRPCHKKAN AYLESINGTG 420 ESSVDDKNRE TFSSRTPAST AKDQSYNPEK TIKPKKSQRH ECPFCDRVFK SGQALGGHKR 480 SHFIVGTEQN MNRSSAVKKV DDLLDLNLPA PLDDDDDEHA HLVSW |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975444 | 0.0 | HG975444.1 Solanum pennellii chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015075947.1 | 0.0 | uncharacterized protein LOC107020161 | ||||
TrEMBL | A0A3Q7H8C8 | 0.0 | A0A3Q7H8C8_SOLLC; Uncharacterized protein | ||||
STRING | Solyc05g012490.1.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1343 | 22 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G26610.1 | 4e-33 | C2H2-like zinc finger protein |