PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen05g006570.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | bHLH | ||||||||
Protein Properties | Length: 325aa MW: 36177.8 Da PI: 5.4487 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 46.9 | 5.1e-15 | 44 | 93 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h+ E+rRR++iN++f+ Lr l+P+ ++K + a+ L ++++Y+++Lq Sopen05g006570.1 44 RSKHSVTEQRRRSKINERFQMLRNLIPHT----DQKRDTASFLFEVIQYVQYLQ 93 899*************************8....8*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 4.1E-22 | 40 | 114 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 5.63E-18 | 40 | 114 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 15.421 | 42 | 92 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.9E-12 | 44 | 93 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 2.22E-14 | 44 | 97 | No hit | No description |
SMART | SM00353 | 5.5E-11 | 48 | 98 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 325 aa Download sequence Send to blast |
MKSGKGHHVE EEEDEYDFGS NRDATPSSNS TKDGKNSDKA NAIRSKHSVT EQRRRSKINE 60 RFQMLRNLIP HTDQKRDTAS FLFEVIQYVQ YLQDTVQKYE GSYQPWSSEP TKLMPWRNSQ 120 WRAQSFPANP QALNNGTDAG PTYSGRFDEN LLTVTSSMQA NQRNPLESHP GGDVKSMDQG 180 KELARTVIAT SMPLQASMPV PFQNDSAFSD SLPTPASDEC PSTTNALNDQ EFMVEGGTIN 240 FSNTYSQGLL NSLTHALQAT GLDLSQASIS VQINLGKRAN KERALGPSVA KDTENPIPAP 300 GDQFLEFRDT NNDEELNQGQ KRLKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive brassinosteroid-signaling protein. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by heat treatment. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975444 | 0.0 | HG975444.1 Solanum pennellii chromosome ch05, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015076812.1 | 0.0 | transcription factor BIM2-like isoform X2 | ||||
Swissprot | Q9CAA4 | 7e-90 | BIM2_ARATH; Transcription factor BIM2 | ||||
TrEMBL | A0A3Q7H7T9 | 0.0 | A0A3Q7H7T9_SOLLC; Uncharacterized protein | ||||
STRING | Solyc05g011810.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA4426 | 23 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69010.1 | 3e-92 | BES1-interacting Myc-like protein 2 |
Publications ? help Back to Top | |||
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