PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen05g004490.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C3H
Protein Properties Length: 338aa    MW: 37893.6 Da    PI: 8.5712
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen05g004490.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH47.82.3e-15257282126
                       --S---SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                       +ktelC+ +++tG C+yG++C+FaHg
  Sopen05g004490.1 257 FKTELCNKWQETGACPYGENCQFAHG 282
                       79***********************8 PP
2zf-CCCH17.38.2e-06295320126
                       --S---SGGGGTS.--TTTTT-SS-SS CS
           zf-CCCH   1 yktelCrffartG.tCkyGdrCkFaHg 26 
                       ykte Cr  +  G  C+yG rC+F H+
  Sopen05g004490.1 295 YKTEVCRMVLN-GdPCPYGHRCHFRHS 320
                       9******9999.55**********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.102.1E-19251289IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.75E-11253288IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.446256284IPR000571Zinc finger, CCCH-type
SMARTSM003563.6E-9256283IPR000571Zinc finger, CCCH-type
PfamPF006422.2E-12257282IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-11290323IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.49E-8290324IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.488294322IPR000571Zinc finger, CCCH-type
SMARTSM003567.8E-5294321IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MQREISTAGR GGAFSYDNGL PSPSVLSQPT AFDLTSLYSS MLFPPAGLLL DDSQPSTETT  60
VTPVLTPRFR QNHSSQLLID QHYQKDLMDR HNRVLSQLLE TEKKTLALRQ ENINLKMVNF  120
NLNNRLQLLL KASSDYGPSS GSGLDNGLRR MHVGVGHEEE TSSDGHSWED VVADRHLSPT  180
SVMDSGRADG VDRVLLPKSI SVRSNGYLKT NHAAGGSRPH NRTKSSSVNT AQRVYVKGGN  240
KKEEEPLELD VYNQGMFKTE LCNKWQETGA CPYGENCQFA HGIEELRPVL RHPRYKTEVC  300
RMVLNGDPCP YGHRCHFRHS LTDKEKLMRS LNSKMRSN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A1e-22257320467Butyrate response factor 2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027773130.10.0zinc finger CCCH domain-containing protein 15-like
SwissprotQ9C9F51e-64C3H15_ARATH; Zinc finger CCCH domain-containing protein 15
TrEMBLA0A3Q7GF010.0A0A3Q7GF01_SOLLC; Uncharacterized protein
STRINGPGSC0003DMT4000785220.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA91402228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68200.14e-62C3H family protein