PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen05g003730.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

Dof

Protein Properties

Length: 441aa MW: 49143.3 Da PI: 6.5089

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen05g003730.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	125.3	2e-39	110	170	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k ++cprC+s++tkfCyynny+++qPryfCk+C+ryWt+GG++rnvPvG+grrknk+ss Sopen05g003730.1 110 PDKLIPCPRCNSMETKFCYYNNYNVNQPRYFCKNCQRYWTAGGTMRNVPVGSGRRKNKSSS 170 78999*****************************************************875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	3.0E-28	110	167	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	4.9E-32	112	168	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.5	114	168	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	116	152	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 441 aa Download sequence Send to blast
MSEVRDPSIK LFGKTIGMTQ QETNCVYLHD DHTTSSPLSI DDEKITLEGE VTQSKQVDEL 60 VDPTADSSIE PETSSGISDD IKMQDADKET LSSKSIEEED SSEEKALKKP DKLIPCPRCN 120 SMETKFCYYN NYNVNQPRYF CKNCQRYWTA GGTMRNVPVG SGRRKNKSSS ISNYPLQAGR 180 VEAAAHGMHL PASRTNGTVL TFGSDKPLCD SMVSALNLAE NSHNMNRNEY HGSERRMPTI 240 GNDQSNGSCS TASSVTDKES SAGTHDLANW NNFQPFPPQV PYFQGAPWPY SGFPVSFYPA 300 APYWGCTVPN PWNVPWLSSD QSVHNNSPTS PTLGKHSRDE SKLDPSQSRR RDTTLQDREG 360 ERCVLIPKTL RIHDPNEAAK SSIWSTLGIR NEKIDSTRGT MLFSAFNPKA DHRNRELDTS 420 FALQANPAAL SRSLHFREST R

Sequence ? help Back to Top

Protein Sequence Length: 441 aa Download sequence Send to blast

MSEVRDPSIK LFGKTIGMTQ QETNCVYLHD DHTTSSPLSI DDEKITLEGE VTQSKQVDEL  60
VDPTADSSIE PETSSGISDD IKMQDADKET LSSKSIEEED SSEEKALKKP DKLIPCPRCN  120
SMETKFCYYN NYNVNQPRYF CKNCQRYWTA GGTMRNVPVG SGRRKNKSSS ISNYPLQAGR  180
VEAAAHGMHL PASRTNGTVL TFGSDKPLCD SMVSALNLAE NSHNMNRNEY HGSERRMPTI  240
GNDQSNGSCS TASSVTDKES SAGTHDLANW NNFQPFPPQV PYFQGAPWPY SGFPVSFYPA  300
APYWGCTVPN PWNVPWLSSD QSVHNNSPTS PTLGKHSRDE SKLDPSQSRR RDTTLQDREG  360
ERCVLIPKTL RIHDPNEAAK SSIWSTLGIR NEKIDSTRGT MLFSAFNPKA DHRNRELDTS  420
FALQANPAAL SRSLHFREST R

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975444	0.0	HG975444.1 Solanum pennellii chromosome ch05, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015074551.1	0.0	cyclic dof factor 1 isoform X1
TrEMBL	A0A3Q7GDS7	0.0	A0A3Q7GDS7_SOLLC; Uncharacterized protein
STRING	Solyc05g007880.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA532	24	122

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G39660.2	3e-79	cycling DOF factor 2