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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Sopen05g003720.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
MYB |
Protein Properties |
Length: 416aa MW: 46449.2 Da PI: 7.5516 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sopen05g003720.1 | genome | spenn | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 50.7 | 4.2e-16 | 120 | 165 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rg W + Ed +l+++v+ +G+ +W++Ia+++ gR++k+c++rw++
Sopen05g003720.1 120 RGHWRPAEDAKLKELVAIYGPQNWNLIAEKLE-GRSGKSCRLRWFNQ 165
899*****************************.***********996 PP
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2 | Myb_DNA-binding | 54.8 | 2.2e-17 | 172 | 215 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
r ++++eE+e+l a++++G++ W+ Iar ++ gRt++ +k++w+
Sopen05g003720.1 172 RRAFSEEEEERLMAAHRLYGNK-WAMIARLFP-GRTDNAVKNHWHV 215
678*******************.*********.***********96 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0010199 | Biological Process | organ boundary specification between lateral organs and the meristem |
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 416 aa
Download sequence Send
to blast |
MSSTSSSCSC SPMGTSMGMF FADMNSLSIN TPESLDEGKG RRGSWDFQFL NKGGSFFSSQ 60 SLDEAQNSEE NNETIDLNAS CFNDEKQITM HSNFNSNNNS SSSGCNGKQT ENGQSKLCAR 120 GHWRPAEDAK LKELVAIYGP QNWNLIAEKL EGRSGKSCRL RWFNQLDPRI NRRAFSEEEE 180 ERLMAAHRLY GNKWAMIARL FPGRTDNAVK NHWHVIMARK YREQSSAYRR RKMGQFVYRR 240 STTVVEEAEN SSGQNSVNHF SMKMNNNNGP NGWVVYGPNG SPHMAASAGE AATPSSTSNV 300 PLYSPYSPFA APSFDSLPAG HCGNEMINVL NQQGGRSWDR QREITHQHPS NSLMMMNNMQ 360 QDQSQYVLQF PYVTQISSSP STTEQGLVKE DKRSNNNSDN NTIAPPFIDF LGVGAT
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