PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sopen05g003630.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

NAC

Protein Properties

Length: 282aa MW: 32590.9 Da PI: 7.3699

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen05g003630.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	168.9	1.7e-52	9	134	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrFhPtdeel+++yL+ +++++++++ ++i+e+d+yk++Pw Lp+k++ +e+ewyfF++rd+ky++g r+nra+ sgyWkatg+dk+++ Sopen05g003630.1 9 LPPGFRFHPTDEELIMYYLRYQATSRPCPV-SIIPEIDVYKFDPWVLPEKAEFGENEWYFFTPRDRKYPNGVRPNRAAVSGYWKATGTDKAIY 100 79**************************.89***********99999************************************** PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 s ++ vg+kk Lvfykg+ pkg+ktdW+mheyrl Sopen05g003630.1 101 S-ANKYVGIKKALVFYKGKPPKGVKTDWIMHEYRL 134 .8899**************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.14E-64	5	161	IPR003441	NAC domain
PROSITE profile	PS51005	60.467	9	161	IPR003441	NAC domain
Pfam	PF02365	6.0E-26	10	134	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 282 aa Download sequence Send to blast
MVGKISSDLP PGFRFHPTDE ELIMYYLRYQ ATSRPCPVSI IPEIDVYKFD PWVLPEKAEF 60 GENEWYFFTP RDRKYPNGVR PNRAAVSGYW KATGTDKAIY SANKYVGIKK ALVFYKGKPP 120 KGVKTDWIMH EYRLSDSKSQ TSKQSGSMRL DDWVLCRIYK KKNLGKTIEM MKVEEEELEA 180 QNVSTTNNEI EVVGGPQTMK LPRICSLSHL LELDYFGSIP QLLSDNLLYD DQSYTMNNVN 240 NTSNVDQVSS QQQNTNNITS NNCNIFFNYQ QPLFVNPTFQ YQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-72	9	163	17	167	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-72	9	163	17	167	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-72	9	163	17	167	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-72	9	163	17	167	NO APICAL MERISTEM PROTEIN
4dul_A	2e-72	9	163	17	167	NAC domain-containing protein 19
4dul_B	2e-72	9	163	17	167	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence and reduces fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. {ECO:0000269\|PubMed:29760199}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. {ECO:0000269\|PubMed:29760199}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF091874	0.0	EF091874.1 Solanum tuberosum NAC domain protein NAC2 (NAC2) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015074984.1	0.0	NAC domain-containing protein 1
Swissprot	K4BWV2	0.0	NAP1_SOLLC; NAC domain-containing protein 1
TrEMBL	M1BKS3	0.0	M1BKS3_SOLTU; Uncharacterized protein
STRING	Solyc05g007770.2.1	0.0	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA746	24	103

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69490.1	1e-110	NAC-like, activated by AP3/PI

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Ma X, et al. The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato. Plant Physiol., 2018. 177(3): p. 1286-1302 [PMID:29760199]