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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sopen05g003580.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
MYB |
Protein Properties |
Length: 293aa MW: 33369.7 Da PI: 9.3092 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sopen05g003580.1 | genome | spenn | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 49.7 | 8.7e-16 | 11 | 58 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+eEd++l+ + +G g+W++ +++ g+ R++k+c++rw +yl
Sopen05g003580.1 11 KGPWTPEEDQKLLSFIDTYGCGSWRALPAKAGLQRCGKSCRLRWINYL 58
79********************************************97 PP
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2 | Myb_DNA-binding | 47.8 | 3.4e-15 | 64 | 107 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
rg+++ +E+ +++++++lG++ W++Ia +++ Rt++++k++w++
Sopen05g003580.1 64 RGKFSLQEERTIIQLHALLGNR-WSAIATYLP-SRTDNEIKNYWNS 107
89********************.*********.***********96 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 293 aa
Download sequence Send
to blast |
MGKFDKEGLK KGPWTPEEDQ KLLSFIDTYG CGSWRALPAK AGLQRCGKSC RLRWINYLRP 60 DIKRGKFSLQ EERTIIQLHA LLGNRWSAIA TYLPSRTDNE IKNYWNSRLK KRLTKMGIDP 120 MTHKPNGAGS SKYVANLSHM AEWESARLEA EARLVRKSKI LFNNNNNSHN YNINPSTISQ 180 QLPYHYQQLP CLDILKAWQI ASTKLPTIND ISHAILRNNS KNKKLDSSIP SSTLNSSENI 240 FANNAPTTTK VDDDDHQNLH NLSTINSCFE DDQLHTELPS FMQEFSGDSC GPY
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Functional Description ? help
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Source |
Description |
UniProt | Functions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}. |