PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen05g003440.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NAC
Protein Properties Length: 399aa    MW: 45161.6 Da    PI: 7.3237
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen05g003440.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM169.21.3e-52151421128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 
                       + pGfrFhPtdeelv +yL++kv++k++++ e ik++diyk++PwdLpk ++ +ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d++++
  Sopen05g003440.1  15 MLPGFRFHPTDEELVGFYLRRKVQQKPISI-ELIKQLDIYKYDPWDLPKLAAVGEKEWYFYCPRDRKYRNSARPNRVTGAGFWKATGTDRPIY 106
                       579***************************.89***************8778899************************************** PP

               NAM  94 sk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       s+ +++ +glkk+Lvfykgra kg ktdW+mhe+rl
  Sopen05g003440.1 107 SSeGSKCIGLKKSLVFYKGRAAKGIKTDWMMHEFRL 142
                       *956677***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.31E-5714173IPR003441NAC domain
PROSITE profilePS5100557.31615173IPR003441NAC domain
PfamPF023651.3E-2517142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0045770Biological Processpositive regulation of asymmetric cell division
GO:0048103Biological Processsomatic stem cell division
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MEERNDKEKN MDEVMLPGFR FHPTDEELVG FYLRRKVQQK PISIELIKQL DIYKYDPWDL  60
PKLAAVGEKE WYFYCPRDRK YRNSARPNRV TGAGFWKATG TDRPIYSSEG SKCIGLKKSL  120
VFYKGRAAKG IKTDWMMHEF RLPSITDSTA PKRFLDKHIP PNDSWAICRI FKKANSNAHR  180
ALSHSWVSPP QVLPQNNTTS HDFLTSSHFT NNSNEMSSFI HKTTSTTSPI QFNDLLQNSS  240
NNNMSSTFTT LDLPLYKTLN SMSNHNNDPI TSYTFSSSCV DNMNNIDASS LLLNMSSSIF  300
GDYSIALPEN IEGGGGGGVH DDTTTTTLKE ANNVIINNME HMDELQWGNV VRSNNIGLMN  360
NFPLNMAADA WKTNLLWDSS SPCPSSEMST SYSTNKCYT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-541717619168NO APICAL MERISTEM PROTEIN
1ut4_B3e-541717619168NO APICAL MERISTEM PROTEIN
1ut7_A3e-541717619168NO APICAL MERISTEM PROTEIN
1ut7_B3e-541717619168NO APICAL MERISTEM PROTEIN
4dul_A3e-541717619168NAC domain-containing protein 19
4dul_B3e-541717619168NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754440.0HG975444.1 Solanum pennellii chromosome ch05, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025886814.10.0putative NAC domain-containing protein 94 isoform X2
TrEMBLA0A3Q7H5W50.0A0A3Q7H5W5_SOLLC; Uncharacterized protein
STRINGSolyc05g007550.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA22022262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26870.11e-108NAC family protein