PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen04g034800.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family bZIP
Protein Properties Length: 444aa    MW: 48341.1 Da    PI: 9.3382
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen04g034800.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1331.3e-10299350556
                       CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkev 56 
                       kr++r   NR++A rs +RK  +i eLe kv++L++e ++L  ++  l+k+ 
  Sopen04g034800.1 299 KRAKRILANRLSAARSKERKTRYISELEHKVQKLQTETTTLSTQVTILQKNF 350
                       9*****************************************9998888765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.1E-13295359IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.875297360IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.53E-11299353No hitNo description
PfamPF001702.5E-9299350IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.0E-11299351No hitNo description
CDDcd147031.93E-19300349No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MAQSNSKPPM SSQNFGVGAV SHVRSLSQSS IFSNSCLPPL SPFPPSEPGM VSGHSSLKDI  60
SMEEIDVNSQ GVGVVSSFTR DGLPPRKGHR RSNSDVPLGF SAMIQSSPQL MPRSGQKVLG  120
RAVSLGDSNG KIDERKPKGE VTDELLFSYM NLENIETLNG SGTEDRDKDS IVSGTKVSGS  180
ESSNNEAESV MKGNTVSIQP TNLREGTKRS ADANIAPAAR HFRSLSMDSA IGNFHYGDES  240
PNVPTSLMMR SGQLSPSNSG NESSSKHNLD FGNSEFSEAE MKKIMADERL AEIAVLDPKR  300
AKRILANRLS AARSKERKTR YISELEHKVQ KLQTETTTLS TQVTILQKNF VEISSLNSEL  360
KFRIQAMEQQ AQLRDALHEA LTAEVQRLKL AAGEHREEGR LPNNMTQQTP VKHNMFQMQR  420
QQPSQMQQLS VGKASAASAT PASA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0128330.0BT012833.1 Lycopersicon esculentum clone 113887F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015071318.10.0transcription factor VIP1-like isoform X1
TrEMBLO819980.0O81998_SOLLC; Transcription factor VSF-1
STRINGSolyc04g081190.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA12652478
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G21230.17e-72bZIP family protein