PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen04g034520.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | ERF | ||||||||
Protein Properties | Length: 254aa MW: 27678.3 Da PI: 4.4119 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 53 | 8.2e-17 | 30 | 79 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 ykGVr++ +g+WvAeIr+p + r +r +lg+f+ ++Aa ++aa++kl+g Sopen04g034520.1 30 TYKGVRQRT-WGKWVAEIREP---N-RgARLWLGTFDNSYDAAVVYDAAALKLYG 79 69****999.**********8...3.35*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 1.46E-19 | 29 | 89 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 4.9E-28 | 30 | 88 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.6E-32 | 30 | 93 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.0E-10 | 30 | 79 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.22E-19 | 30 | 88 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 21.272 | 30 | 87 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-7 | 31 | 42 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-7 | 53 | 69 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence Send to blast |
MSSNSKKLIP ATSRKGCMRG KGGPENANCT YKGVRQRTWG KWVAEIREPN RGARLWLGTF 60 DNSYDAAVVY DAAALKLYGA EAKLNLPHLY NNQAQAHAQA QIQNSKPITI MSPSLSPAST 120 TTAQASSPSV TSVYNVASPS TWSVGSDDSS FYFNSHDFGI NNDIPSAFNL IDINKTADDY 180 PDDYPVDNAT NDNQSSQVLG GEMFRDLNMN LPEIDDSSIW EEAKATTSFQ EAVNDPGIGG 240 YNLDDDLNFP PWCG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-17 | 31 | 87 | 3 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00240 | DAP | Transfer from AT1G75490 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975443 | 0.0 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015073149.1 | 0.0 | dehydration-responsive element-binding protein 2B-like | ||||
TrEMBL | A0A3Q7H356 | 1e-155 | A0A3Q7H356_SOLLC; Uncharacterized protein | ||||
STRING | Solyc04g080910.1.1 | 1e-156 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3155 | 22 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75490.1 | 1e-38 | ERF family protein |