PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen04g034370.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family TALE
Protein Properties Length: 389aa    MW: 44252.9 Da    PI: 6.7066
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen04g034370.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.72.2e-093163531954
                       HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
          Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                       Fe   ++yp+ +e+  L++++gL+++qV++WF N R +
  Sopen04g034370.1 316 FEHflHPYPNDSEKLMLSSQTGLSKNQVSNWFINARVR 353
                       554459******************************88 PP
2BELL97.31.2e-31178249172
              BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                       er+el  k+ kL+ lleeV++rY+qy++ ++ v s Fe++ag g+ k Yt+lAl+a+SrhF cL+d i+ qi
  Sopen04g034370.1 178 ERHELYVKIMKLIALLEEVERRYEQYYQHMEEVTSTFEVIAGFGAGKAYTALALQAMSRHFCCLRDSIIAQI 249
                       799*******************************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005744.2E-28109247IPR006563POX domain
PfamPF075261.1E-37115245IPR006563POX domain
PROSITE profilePS5007111.629294357IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.3E-26296371IPR009057Homeodomain-like
SMARTSM003894.2E-9297361IPR001356Homeobox domain
CDDcd000863.72E-10297358No hitNo description
SuperFamilySSF466893.85E-17302364IPR009057Homeodomain-like
PfamPF059206.9E-17314353IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 389 aa     Download sequence    Send to blast
MYQSDTTTAY QPHGGLSRSI EFVNHPDFTT DSHDVNHSRH LMDLLGASHD ANTNQQAQRL  60
SLSLGSHSLV STFTNNPSYM NQEIDQRNNE FSFSAAAMNQ SFSNVCGTES FVSAIGNSKY  120
LKPTQSLLEE LVCIGGKTID SSNEKFIRRL SRNSKKGSLS LRAMLKGEIP PSNELFNERH  180
ELYVKIMKLI ALLEEVERRY EQYYQHMEEV TSTFEVIAGF GAGKAYTALA LQAMSRHFCC  240
LRDSIIAQIN VIRQKMPRDV PKISSGLSHL SLFEKETLQN RISLQQLGII QSNRQAWRPI  300
RGLPETSVAI LRSWLFEHFL HPYPNDSEKL MLSSQTGLSK NQVSNWFINA RVRLWKPMIE  360
EMYKEEFAES SVESDNLLNR EAVTDSAEE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A2e-15303361563Homeobox protein Meis2
3k2a_B2e-15303361563Homeobox protein Meis2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3759650.0AF375965.1 Lycopersicon esculentum bell-like homeodomain protein 1 (BL1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015072329.10.0BEL1-like homeodomain protein 11
SwissprotQ1PFD15e-98BLH11_ARATH; BEL1-like homeodomain protein 11
TrEMBLQ7Y0Z80.0Q7Y0Z8_SOLLC; Bell-like homeodomain protein 1 (Fragment)
STRINGSolyc04g080780.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA86022228
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75430.13e-93BEL1-like homeodomain 11