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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sopen04g033710.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
C2H2 |
Protein Properties |
Length: 499aa MW: 53957.5 Da PI: 7.9454 |
Description |
C2H2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sopen04g033710.1 | genome | spenn | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-C2H2 | 17.2 | 1.4e-05 | 49 | 71 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
++C++C+k F r nL+ H r H
Sopen04g033710.1 49 FVCEICNKGFQRDQNLQLHRRGH 71
89*******************88 PP
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2 | zf-C2H2 | 13.7 | 0.00018 | 125 | 147 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+kC+ C+k + +s+ k H++t+
Sopen04g033710.1 125 FKCERCTKKYAVHSDWKAHMKTC 147
89*******************98 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 499 aa
Download sequence Send
to blast |
MAEIEKSAEE SSIQQNFPVK RKRNLPGNPD PEAEVIALSP RTLMATNRFV CEICNKGFQR 60 DQNLQLHRRG HNLPWKLRQR TSNEVKKRVY VCPESTCVHH DPSRALGDLT GIKKHFCRKH 120 GEKKFKCERC TKKYAVHSDW KAHMKTCGTR EYRCDCGTLF SRRDSFITHR AFCDALAQES 180 ARSHQPLMED TNAEGDLKVD ESINKTVSSS SSPPPQPLTP STGVLSPVLS IQSSELPVEY 240 QNQGGVQIQQ AQGTTTPVST TPAITISTAA ANGPSSSKVF ASVFPSSSSA QHVNSSYSDI 300 LRAIETEQVM AVEPISLSLS SSLYLSNNGP SLFQEHTGGH GHGQHYGSAT MQPALSATAL 360 LQKAAQMGST TSNNSFLRGL GLGMSPSTST PEENSLARRT NALGHVKLES NINAEVPGLG 420 IQLHGHSGFT DLMMGPSISH QTSMMFGSKP PTLDFLGLGN GASGTPSSGF SAFLSSMEDG 480 FGVVAEPWDD PSDRKPAML
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Functional Description ? help
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Source |
Description |
UniProt | Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT013478 | 0.0 | BT013478.1 Lycopersicon esculentum clone 132154R, mRNA sequence. |