PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen04g033170.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family B3
Protein Properties Length: 549aa    MW: 60619.6 Da    PI: 6.8493
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen04g033170.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B348.91.2e-156683399
                      -SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                B3 33 sktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                      s t++l  +sg+ W v l   +++++ ++ +GW +Fvk++ L++gD++vF++dg+  f  +v+vf++
  Sopen04g033170.1  6 SGTIVLVGPSGNAWPVDL--IQQDDGLFFNNGWVSFVKDHCLETGDSLVFRYDGDLHF--TVQVFDE 68
                      458***************..99999***************************997777..9999986 PP
2B353.93.3e-17218312198
                       EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                       f kv+++ + + s  l +p +fa+eh   +++++++ l +++g++W+v+ i  ++ + ++++ +GW +Fv++n+++ gD+++F+l+++ e  l
  Sopen04g033170.1 218 FTKVMKRFNISGSYTLHIPYQFATEHL--PNCKVKILLHNLEGKTWTVNSIPtTRVQTSHTFCGGWLSFVRDNNIDLGDTCIFELVRKCE--L 306
                       677777777788889***********6..45999****************77566666699***********************998544..5 PP

                       EEEEE- CS
                B3  93 vvkvfr 98 
                       +v+v++
  Sopen04g033170.1 307 RVRVLK 312
                       787776 PP
3B345.21.7e-144425231397
                       TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                       s  l +p +f  eh   +++ ++++l++++g+ W+v+ i + k ++ +++ +GW+ Fv++n+++ gD+++F+l+g  + e++v+++
  Sopen04g033170.1 442 SYTLKVPCRFSMEHL--PNCRTEIVLQNLKGECWTVNSIPTVKVQTlHTFCGGWSAFVRENDIQMGDICIFELIG--KYEMRVHIC 523
                       556889999988886..45889****************99888888999************************99..555678887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010190.0056169IPR003340B3 DNA binding domain
PROSITE profilePS5086314.536169IPR003340B3 DNA binding domain
SuperFamilySSF1019369.81E-19574IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.2E-17670IPR015300DNA-binding pseudobarrel domain
PfamPF023622.7E-13668IPR003340B3 DNA binding domain
CDDcd100173.37E-15667No hitNo description
SuperFamilySSF1019364.32E-24211312IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.5E-23213314IPR015300DNA-binding pseudobarrel domain
CDDcd100171.74E-20216312No hitNo description
SMARTSM010192.1E-16218314IPR003340B3 DNA binding domain
PfamPF023629.6E-15218311IPR003340B3 DNA binding domain
PROSITE profilePS5086313.93218314IPR003340B3 DNA binding domain
SuperFamilySSF1019363.73E-23425523IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.8E-22425523IPR015300DNA-binding pseudobarrel domain
CDDcd100171.08E-19428523No hitNo description
PROSITE profilePS5086312.337430526IPR003340B3 DNA binding domain
SMARTSM010195.4E-9430526IPR003340B3 DNA binding domain
PfamPF023626.7E-12433523IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    Send to blast
MEGGDSGTIV LVGPSGNAWP VDLIQQDDGL FFNNGWVSFV KDHCLETGDS LVFRYDGDLH  60
FTVQVFDESS CEKEASYNAD CSQGATDLYN LALKKRDRGN SVLLDCMVEG VPKKMKSTEI  120
PSECTSSQDT HGLASSKDGY TPEDAVCSYA GRNYAASFLD EMENAGDALN SKVTIAVPAQ  180
AKIIFSNPGN ASSEKDMWLP AQEAEKVAGL FTSSLPSFTK VMKRFNISGS YTLHIPYQFA  240
TEHLPNCKVK ILLHNLEGKT WTVNSIPTTR VQTSHTFCGG WLSFVRDNNI DLGDTCIFEL  300
VRKCELRVRV LKAEKEGSDY SSKVVDEGLV TDYAKNSGCK SRKVGSSSDQ AKVMTYDKKG  360
STSEKEKHGN MLKNHQLHSQ SKISSGDSAI RKPTSSQDKQ GSFTKSCMSM KSVPEEKLAA  420
ESFISNFPHF VRIMKKFNIS GSYTLKVPCR FSMEHLPNCR TEIVLQNLKG ECWTVNSIPT  480
VKVQTLHTFC GGWSAFVREN DIQMGDICIF ELIGKYEMRV HICAIGKKGL DYQNGITPKE  540
SDILASLTS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015071384.10.0B3 domain-containing protein Os01g0723500-like isoform X1
TrEMBLA0A3Q7GAI80.0A0A3Q7GAI8_SOLLC; Uncharacterized protein
STRINGSolyc04g079590.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA98202126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.14e-16B3 family protein