PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen04g032270.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NAC
Protein Properties Length: 272aa    MW: 29996.9 Da    PI: 6.5951
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen04g032270.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM84.32.5e-2691381128
               NAM   1 lppGfrFhPtdeelvveyLkkkvegkk..leleevikevdiykvePwdLpk....kvka..eekewyfFskrdkkyatgkrknratksgyWka 85 
                       lppG +F P+d++l+++yL  k  +++     ++ i+e+d+y+++P +Lp     ++    ++++w+ F+ r  k       +r +  gyWk+
  Sopen04g032270.1   9 LPPGTQFYPSDQQLISYYLSSKNGADHrnGVGFDLIREIDLYNFDPFNLPDsacfRYGRggRKRHWFCFVARVLKG-----GRRRAGGGYWKK 96 
                       79********************8877743333578**************944666333422444666666665543.....2445689***** PP

               NAM  86 tgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        g+ ++v+ +  ++ +vg++k++ fy g+    +ktdW+m ey+l
  Sopen04g032270.1  97 RGRVRDVVGAgaGKIVVGTRKSFDFYLGDC---TKTDWLMYEYAL 138
                       ********99767778**********7655...56********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-326154IPR003441NAC domain
PROSITE profilePS5100536.8279154IPR003441NAC domain
PfamPF023657.4E-1810138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 272 aa     Download sequence    Send to blast
MGDTASFSLP PGTQFYPSDQ QLISYYLSSK NGADHRNGVG FDLIREIDLY NFDPFNLPDS  60
ACFRYGRGGR KRHWFCFVAR VLKGGRRRAG GGYWKKRGRV RDVVGAGAGK IVVGTRKSFD  120
FYLGDCTKTD WLMYEYALTG HPMASFVLCR VFIKSHHGNN LSGHVFSSNG EEIVSTVRHI  180
GIQFDGSAAP VTGSKMHDEN MIDQENDVSK LPSGLVPDLN GQVVAENVAK QICLESDGPP  240
VLNDYSAQEL VAILEGDFIE LDDLLCPLPG IH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-22516013171NO APICAL MERISTEM PROTEIN
1ut4_B3e-22516013171NO APICAL MERISTEM PROTEIN
1ut7_A3e-22516013171NO APICAL MERISTEM PROTEIN
1ut7_B3e-22516013171NO APICAL MERISTEM PROTEIN
3swm_A3e-22516016174NAC domain-containing protein 19
3swm_B3e-22516016174NAC domain-containing protein 19
3swm_C3e-22516016174NAC domain-containing protein 19
3swm_D3e-22516016174NAC domain-containing protein 19
3swp_A3e-22516016174NAC domain-containing protein 19
3swp_B3e-22516016174NAC domain-containing protein 19
3swp_C3e-22516016174NAC domain-containing protein 19
3swp_D3e-22516016174NAC domain-containing protein 19
4dul_A3e-22516013171NAC domain-containing protein 19
4dul_B3e-22516013171NAC domain-containing protein 19
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18391GGRRRAGGG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015071537.10.0NAC domain-containing protein 55-like
RefseqXP_015071538.10.0NAC domain-containing protein 55-like
RefseqXP_015071539.10.0NAC domain-containing protein 55-like
TrEMBLA0A3Q7G9000.0A0A3Q7G900_SOLLC; Uncharacterized protein
STRINGSolyc04g078670.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA135281314
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.24e-20NAC family protein