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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sopen04g032150.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
WRKY |
Protein Properties |
Length: 351aa MW: 38560.5 Da PI: 10.2619 |
Description |
WRKY family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sopen04g032150.1 | genome | spenn | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | WRKY | 98.3 | 5.1e-31 | 279 | 336 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59
D y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ +d ++++tYegeHnh+
Sopen04g032150.1 279 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDAAMLIVTYEGEHNHS 336
99************************988****************************7 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0005516 | Molecular Function | calmodulin binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 351 aa
Download sequence Send
to blast |
MAVDLMTSGY RTDNFSSKME ETAVQEAATA GLQSVEKLIR LLSKSHQNQQ QQKTNFQDSS 60 SGNSSVSADY QAVADAAVNK FKKFISLLDK NRTGHARFRR GPISSLSPPL PSKQQQLQQS 120 IKNQKPQIEE IEKPQTSNTK IYCPTPIQRL PPLPHNHLQL VKNGSIERKE ASTTINFASP 180 SPATSFMSSL TGETESLQQS LSSGFQITNL SQVSSAGRPP LSTSSFKRKC SSMDDTALKC 240 SSAGGSSGRC HCPKKRKSRV KRVVRVPAIS MKMADIPPDD YSWRKYGQKP IKGSPHPRGY 300 YKCSSVRGCP ARKHVERALD DAAMLIVTYE GEHNHSHSIT ETPGAHVLES S
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Functional Description ? help
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Source |
Description |
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | EU056914 | 0.0 | EU056914.1 Solanum tuberosum WRKY transcription factor 2 mRNA, complete cds. |