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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sopen04g031890.2 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
MIKC_MADS |
Protein Properties |
Length: 334aa MW: 38211.8 Da PI: 5.7746 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sopen04g031890.2 | genome | spenn | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 90 | 1.2e-28 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
k+ien++nrqvtfskRrng++KKA+ELSvLCd++va+i+fs++g++ ++s
Sopen04g031890.2 9 KKIENTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRVSTFS 58
68***********************************************8 PP
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2 | K-box | 19.4 | 4.3e-08 | 102 | 174 | 1 | 74 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnelll 74
yq+ s+ s +++ e+ qqe+ + k ++e ++r +R + G+ e ++ e q e+ L++ lk++ ++K+ +l
Sopen04g031890.2 102 YQAPSSPSSVDSHIEEFQQEIIRYKTQVEDMERRLRMYEGDFCEITTVCEAQYREEILQETLKQVQARKQ-VLE 174
5666777788999*******************************************************95.444 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 334 aa
Download sequence Send
to blast |
MGRVKLQIKK IENTTNRQVT FSKRRNGLIK KAYELSVLCD VDVALIMFSP SGRVSTFSGN 60 KSIEDIMARY VNLPEHDRGR LHNQEHLQRA IAKLKCEADR TYQAPSSPSS VDSHIEEFQQ 120 EIIRYKTQVE DMERRLRMYE GDFCEITTVC EAQYREEILQ ETLKQVQARK QVLEENYHSP 180 QTQNTTQPQM DFSGQNVNMV NNVATSDAIA NSSFMDWVPH SQRDPHVQIL NFLDSNGLLP 240 FRDEADQHML PPSLNQLHGV NVPAGTDHLS PNSRFDQNNP PRPSSFDGII DVNNAPWPPL 300 YTTGDDPFPV SQPRERAILE LFLSQLTPVN QDHI
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1tqe_P | 5e-16 | 1 | 89 | 1 | 90 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 5e-16 | 1 | 89 | 1 | 90 | Myocyte-specific enhancer factor 2B |
1tqe_R | 5e-16 | 1 | 89 | 1 | 90 | Myocyte-specific enhancer factor 2B |
1tqe_S | 5e-16 | 1 | 89 | 1 | 90 | Myocyte-specific enhancer factor 2B |
6c9l_A | 5e-16 | 1 | 89 | 1 | 90 | Myocyte-specific enhancer factor 2B |
6c9l_B | 5e-16 | 1 | 89 | 1 | 90 | Myocyte-specific enhancer factor 2B |
6c9l_C | 5e-16 | 1 | 89 | 1 | 90 | Myocyte-specific enhancer factor 2B |
6c9l_D | 5e-16 | 1 | 89 | 1 | 90 | Myocyte-specific enhancer factor 2B |
6c9l_E | 5e-16 | 1 | 89 | 1 | 90 | Myocyte-specific enhancer factor 2B |
6c9l_F | 5e-16 | 1 | 89 | 1 | 90 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | HG975443 | 1e-100 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. |