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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sopen04g031890.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
MIKC_MADS |
Protein Properties |
Length: 333aa MW: 38124.7 Da PI: 5.7746 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sopen04g031890.1 | genome | spenn | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 90 | 1.2e-28 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
k+ien++nrqvtfskRrng++KKA+ELSvLCd++va+i+fs++g++ ++s
Sopen04g031890.1 9 KKIENTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRVSTFS 58
68***********************************************8 PP
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2 | K-box | 18.3 | 9.4e-08 | 109 | 173 | 9 | 74 |
K-box 9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnelll 74
+++ e+ qqe+ + k ++e ++r +R + G+ e ++ e q e+ L++ lk++ ++K+ +l
Sopen04g031890.1 109 SVDSHIEEFQQEIIRYKTQVEDMERRLRMYEGDFCEITTVCEAQYREEILQETLKQVQARKQ-VLE 173
568899******************************************************95.444 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 333 aa
Download sequence Send
to blast |
MGRVKLQIKK IENTTNRQVT FSKRRNGLIK KAYELSVLCD VDVALIMFSP SGRVSTFSGN 60 KSIEDIMARY VNLPEHDRGR LHNQEHLQRA IAKLKCEADR TYQAPSPSSV DSHIEEFQQE 120 IIRYKTQVED MERRLRMYEG DFCEITTVCE AQYREEILQE TLKQVQARKQ VLEENYHSPQ 180 TQNTTQPQMD FSGQNVNMVN NVATSDAIAN SSFMDWVPHS QRDPHVQILN FLDSNGLLPF 240 RDEADQHMLP PSLNQLHGVN VPAGTDHLSP NSRFDQNNPP RPSSFDGIID VNNAPWPPLY 300 TTGDDPFPVS QPRERAILEL FLSQLTPVNQ DHI
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1tqe_P | 5e-16 | 1 | 89 | 1 | 90 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 5e-16 | 1 | 89 | 1 | 90 | Myocyte-specific enhancer factor 2B |
1tqe_R | 5e-16 | 1 | 89 | 1 | 90 | Myocyte-specific enhancer factor 2B |
1tqe_S | 5e-16 | 1 | 89 | 1 | 90 | Myocyte-specific enhancer factor 2B |
6c9l_A | 5e-16 | 1 | 89 | 1 | 90 | Myocyte-specific enhancer factor 2B |
6c9l_B | 5e-16 | 1 | 89 | 1 | 90 | Myocyte-specific enhancer factor 2B |
6c9l_C | 5e-16 | 1 | 89 | 1 | 90 | Myocyte-specific enhancer factor 2B |
6c9l_D | 5e-16 | 1 | 89 | 1 | 90 | Myocyte-specific enhancer factor 2B |
6c9l_E | 5e-16 | 1 | 89 | 1 | 90 | Myocyte-specific enhancer factor 2B |
6c9l_F | 5e-16 | 1 | 89 | 1 | 90 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | HG975443 | 1e-100 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. |