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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen04g031190.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | bZIP | ||||||||
Protein Properties | Length: 139aa MW: 16614.7 Da PI: 7.8446 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 44.4 | 3.5e-14 | 54 | 111 | 5 | 62 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 ++ rrk++NRe+ArrsR+RKk ie+ +e v L+aeN++Lk++l ++++ +se Sopen04g031190.1 54 RKRRRKISNRESARRSRLRKKNHIEKITEQVNRLKAENRDLKNQLWVAAHHCQAAQSE 111 6789**************************************9998888888876665 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 4.1E-12 | 50 | 114 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 9.3E-11 | 52 | 98 | No hit | No description |
PROSITE profile | PS50217 | 11.174 | 52 | 98 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 3.62E-10 | 54 | 105 | No hit | No description |
Pfam | PF00170 | 2.3E-11 | 54 | 107 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14702 | 2.86E-14 | 55 | 106 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 57 | 72 | IPR004827 | Basic-leucine zipper domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 139 aa Download sequence Send to blast |
MFDDPVHYHF PVLEDFFHSS NDFNDLFSLL ETEIPVQSTS GSETNRLVFL LEERKRRRKI 60 SNRESARRSR LRKKNHIEKI TEQVNRLKAE NRDLKNQLWV AAHHCQAAQS ETDRLRLESF 120 VLQQYLVELH ESLNSMQLH |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 53 | 57 | RKRRR |
2 | 66 | 72 | RRSRLRK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975443 | 0.0 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028065855.1 | 7e-39 | basic leucine zipper 4-like | ||||
TrEMBL | M1A1G0 | 3e-82 | M1A1G0_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400012575 | 5e-83 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2820 | 22 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49760.1 | 2e-21 | basic leucine-zipper 5 |