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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sopen04g030810.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
HD-ZIP |
Protein Properties |
Length: 264aa MW: 30237.7 Da PI: 8.5768 |
Description |
HD-ZIP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sopen04g030810.1 | genome | spenn | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Homeobox | 57.1 | 3.1e-18 | 120 | 174 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
rk+ ++tkeq ++Le+ F+++ +++ +++++LA++l+L rqV vWFqNrRa+ k
Sopen04g030810.1 120 RKKLRLTKEQSDVLEDSFKEHTTLNSKQKRDLARRLSLRPRQVEVWFQNRRARTK 174
788899***********************************************98 PP
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2 | HD-ZIP_I/II | 118.3 | 4.2e-38 | 120 | 209 | 1 | 91 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91
+kk+rl+keq+ +LE+sF+e+++L++++K +lar+L l+prqv+vWFqnrRARtk+kq+E d+e L+++y+ lk+en+rL+ke ++L+ +l
Sopen04g030810.1 120 RKKLRLTKEQSDVLEDSFKEHTTLNSKQKRDLARRLSLRPRQVEVWFQNRRARTKLKQTEIDCEILRKCYEDLKDENRRLNKEIQDLK-SL 209
69*************************************************************************************9.55 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 264 aa
Download sequence Send
to blast |
MMCNTRLSLS LGLSTTPPHQ HNNKGKLSSY DDDNQELTLC LSTSSEFTNN YDNNNRINPQ 60 LLGGVNSSVS SFSNTSSVKR ERDHASSFDE EVENLETKKV LIISPKGFVD HNDDDDYGTR 120 KKLRLTKEQS DVLEDSFKEH TTLNSKQKRD LARRLSLRPR QVEVWFQNRR ARTKLKQTEI 180 DCEILRKCYE DLKDENRRLN KEIQDLKSLK KSQPFRVQLS AATLSMCPSC ERTYGGAATD 240 NSTKISFSIG DQKPHFYGIP SQIH
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Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 118 | 124 | TRKKLRL |
2 | 168 | 176 | RRARTKLKQ |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor. {ECO:0000250}. |