PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen04g029590.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family GeBP
Protein Properties Length: 393aa    MW: 43591.9 Da    PI: 5.2961
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen04g029590.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF573121.73.6e-38171267298
            DUF573   2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskk 94 
                       lfqrlwse+Dei++L+G+ d+++k++++p++d++af++f+kks++++vsk ql +KirrLKkK++++  k k+gke +fsk+h+qk++els+k
  Sopen04g029590.1 171 LFQRLWSEDDEIAILKGMTDYRSKKKADPVADLSAFHDFIKKSLHVDVSKAQLQDKIRRLKKKYENNAGKEKKGKERTFSKPHEQKAYELSQK 263
                       79******************************************************************************************* PP

            DUF573  95 iWgs 98 
                       +Wg+
  Sopen04g029590.1 264 VWGK 267
                       **95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045042.2E-35172266IPR007592Protein of unknown function DUF573
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005730Cellular Componentnucleolus
GO:0005829Cellular Componentcytosol
GO:0009507Cellular Componentchloroplast
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MAKSRPEKEE EEESGEEMEV SSPGNADTES GSESESESEP EQEQPPKKPP VAAPKKPQPQ  60
DDSSSSTEEE SDSESEPDPE TQKPNPVVKP IASKPMDEPK KAAPIVEKKP KSKADATSKL  120
TSPKKSTAVV GTKRPVDDGE AKESKRSKKK PEKQIETPVA KTPTDDVKRQ LFQRLWSEDD  180
EIAILKGMTD YRSKKKADPV ADLSAFHDFI KKSLHVDVSK AQLQDKIRRL KKKYENNAGK  240
EKKGKERTFS KPHEQKAYEL SQKVWGKEKT DKVPVEVVQV ENETASKGRN NSVGEDNGVL  300
DVVKEENLSA EMEKTVEVTP NLNLISCGGS VAALEKWLEE YSGLLSIEKL NEIKKKSTSL  360
KEAESRLCLR RVNLIAEQGK LMDEAMNASG IDI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015073937.10.0GLABROUS1 enhancer-binding protein-like
TrEMBLM1D1F70.0M1D1F7_SOLTU; Uncharacterized protein
STRINGPGSC0003DMT4000792150.0(Solanum tuberosum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA30421947
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61730.19e-23DNA-binding storekeeper protein-related transcriptional regulator