PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen04g028280.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | NAC | ||||||||
Protein Properties | Length: 231aa MW: 26418.7 Da PI: 6.0457 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 70.4 | 4.9e-22 | 5 | 137 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevik.evdiy.kvePwdLp.k...kvkaeekewy.fFskrdkkyatgkrknr..atksgyWka 85 + GfrF+Ptdee + +L + ++gk +e + +i+ +vd y + ePwd+ + +++ ++ + y fF+++ kk+ +++r +r k g Wk+ Sopen04g028280.1 5 QEGFRFSPTDEEAL-TFLLRFIAGKLMEDSGFITfHVDTYgEQEPWDIYnQgvsCCNDDDCSQYrFFITNLKKK-SKSRYSRnvGNKGGSWKQ 95 68***********9.8999999999998878765256877367*****73355433334444452666555555.566777732356899*** PP NAM 86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 k+k++ +++g+++g kk++ + ++ k e+ +W+m+ey l Sopen04g028280.1 96 EDKSKPIRKSDGAVIGSKKSMCYK-KKGYKQEHGHWLMKEYDL 137 **********************98.56666689********87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.49E-23 | 3 | 160 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 24.944 | 4 | 160 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.4E-14 | 6 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MENLQEGFRF SPTDEEALTF LLRFIAGKLM EDSGFITFHV DTYGEQEPWD IYNQGVSCCN 60 DDDCSQYRFF ITNLKKKSKS RYSRNVGNKG GSWKQEDKSK PIRKSDGAVI GSKKSMCYKK 120 KGYKQEHGHW LMKEYDLSPH ILDKFDKDCR DFVLCAIKKK KSSSKGKLNI VGEQDQSSCE 180 GLQVDAGELE LQNIDMHEGT SNLVEPLSAP VFDFDYQYSS VDFDCLRSIT A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975443 | 0.0 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015072777.1 | 1e-173 | NAC domain-containing protein 78-like | ||||
TrEMBL | M1CCG7 | 1e-114 | M1CCG7_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400064497 | 1e-115 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2219 | 12 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G33060.2 | 1e-10 | NAC 014 |