PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen04g028210.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | NAC | ||||||||
Protein Properties | Length: 253aa MW: 29340.5 Da PI: 5.8468 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 72.5 | 1.1e-22 | 5 | 139 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevik.evdiy.kvePwdLpk.....kvkaeek..ewy.fFskrdkkyatgkrknr.atksgyW 83 GfrF+Ptd e v +L + ++gk +e + +i+ +vd y + ePwd+ + + +++++ + y fF+++ kk+ +++r +r + ++g W Sopen04g028210.1 5 KEGFRFSPTDAEAV-TFLLRFIAGKLMEDSGFITfHVDTYgEQEPWDIYNqgvscCNDHDDNdcSQYrFFITKLKKK-SKSRYSRdVGNKGSW 95 68************.8999999999998878765256877367*****74466652222334343352666666655.56788886889**** PP NAM 84 katgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 k++ k+k+v +k+g ++g kk++ + ++ k e+ +W+m+ey+l Sopen04g028210.1 96 KQQDKSKPVRKKGGPVIGYKKSMCYM-NKGYKQENGHWLMKEYAL 139 *************************9.56666689********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.28E-21 | 3 | 161 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 24.566 | 4 | 162 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.5E-14 | 6 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 253 aa Download sequence Send to blast |
MENLKEGFRF SPTDAEAVTF LLRFIAGKLM EDSGFITFHV DTYGEQEPWD IYNQGVSCCN 60 DHDDNDCSQY RFFITKLKKK SKSRYSRDVG NKGSWKQQDK SKPVRKKGGP VIGYKKSMCY 120 MNKGYKQENG HWLMKEYALS AYLLDKFDKD CRDYVLCAIK KRTRIKSRSK GTMKLTNAVS 180 EECTNLEDQS SGTVESTSYD EALQELLINM PDETNMVIEP LCTFEGMPML DIDFDILPDF 240 DCMFQLLEFP KMR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975443 | 0.0 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015072775.1 | 0.0 | NAC domain-containing protein 78-like | ||||
TrEMBL | M1D2T5 | 1e-142 | M1D2T5_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400079990 | 1e-143 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2219 | 12 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04410.1 | 2e-10 | NAC domain containing protein 2 |