PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen04g028190.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | NAC | ||||||||
Protein Properties | Length: 231aa MW: 26297.6 Da PI: 6.0431 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 71.8 | 1.8e-22 | 5 | 137 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevik.evdiy.kvePwdLp.k...kvkaeek.ewyfFskrdkkyatgkrknr..atksgyWka 85 + GfrF+Ptdee v +L + ++gk ++ + +i+ +vd y + ePwd+ + +++ ++ ++ fF+++ kk+ +++r +r +k g Wk+ Sopen04g028190.1 5 QEGFRFSPTDEEAV-TFLLRFIAGKLMDDSGFITfHVDTYgEQEPWDIYnQgvsCCNDNDCsQYRFFITNLKKK-SKSRYSRnvGIKGGSWKQ 95 68************.8999999999988878765256877367*****73355433333332444666555555.4566666334789***** PP NAM 86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 k+k++ +++g+++g kk++ + + k e+ +W+m+ey l Sopen04g028190.1 96 EDKSKPIRKSDGAVIGSKKSMCYK-TKGYKQEHGHWLMKEYDL 137 **********************98.56666689********87 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.83E-23 | 3 | 160 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 24.926 | 4 | 160 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.5E-14 | 6 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MENLQEGFRF SPTDEEAVTF LLRFIAGKLM DDSGFITFHV DTYGEQEPWD IYNQGVSCCN 60 DNDCSQYRFF ITNLKKKSKS RYSRNVGIKG GSWKQEDKSK PIRKSDGAVI GSKKSMCYKT 120 KGYKQEHGHW LMKEYDLSPH ILDKFDKDCR DFVLCAIKKK KSSSKGKLNI VGEQDQSSCE 180 GLQVDAGELE LQNIDMHEGT SNLVEPLSAP VFDFDYQYSP ADFDGLRSIT A |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975443 | 0.0 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015072774.1 | 1e-173 | NAC domain-containing protein 91-like | ||||
TrEMBL | M1CCG7 | 1e-113 | M1CCG7_SOLTU; Uncharacterized protein | ||||
STRING | PGSC0003DMT400064497 | 1e-114 | (Solanum tuberosum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2219 | 12 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G22380.1 | 2e-14 | NAC domain containing protein 90 |