PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen04g026760.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C3H
Protein Properties Length: 586aa    MW: 66531.4 Da    PI: 8.8835
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen04g026760.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH25.81.8e-08163181625
                       -SGGGGTS--TTTTT-SS-S CS
           zf-CCCH   6 CrffartGtCkyGdrCkFaH 25 
                       Cr+fa+ G C++G+ C+F+H
  Sopen04g026760.1 163 CRNFAA-GNCRRGSDCRFIH 181
                       ******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.0E-4157183IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-5162181IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.629162184IPR000571Zinc finger, CCCH-type
PfamPF006421.8E-5163182IPR000571Zinc finger, CCCH-type
SMARTSM003560.0087242268IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.629242269IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.1E-4246267IPR000571Zinc finger, CCCH-type
SMARTSM003561.4293318IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.746293319IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 586 aa     Download sequence    Send to blast
MGENAKKRKS LWDAEEESPP KYEEWGPPKP ENSWQSKSRS GWSSGDNVTG TEDLRKDNYH  60
YKSMSPAFER RERRNNSHSP DNGRAQSHRY VGRARSRSRG RGEGRSRSRS RGRDKFRTRS  120
RSRSRDRGSM RVQNRSRSPH NTKRDPYASG DRRASLHTSS HVCRNFAAGN CRRGSDCRFI  180
HLDSASHRDE GHSEDNLSER LGSRPERGHI SRYNDSEGPG YQSRDMLPDM HHLEDELNRN  240
RSRGTITCRN FVKSNCRWGA SCRFSHDGAS GDNYDKGTRS TSFDHGQDNQ ATRTGKSLCE  300
YFAAGKCYKD NCEFSHDATS RNHEIRPLDD IGEQVHQMES CPASMIKKLE EGLQEAQLQS  360
VLNPSGPSGM LPSNPISSLV HALYGQTNPE MRVLDNYHPP DGLELNTSGN FKLPPDNSFY  420
LDRDSIKVPM DQVIQTSTVD PELGNNDQID EVKQQENELV EVDGKDKLAP GESKDVQEND  480
HPGAMNLHGK VEEGSGNKDE KVMRLFKNAL IEFVKEILKP IWKEGKMSRE VHKTIVKKVV  540
DKVTGAIQGE QVPKTQEKIE QYLSHSKPKI TKLVQAYVER LLKNEA
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1116126RTRSRSRSRDR
2118126RSRSRSRDR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015073315.10.0zinc finger CCCH domain-containing protein 55-like
RefseqXP_015073316.10.0zinc finger CCCH domain-containing protein 55-like
RefseqXP_015073317.10.0zinc finger CCCH domain-containing protein 55-like
TrEMBLA0A3Q7GYM10.0A0A3Q7GYM1_SOLLC; Uncharacterized protein
STRINGSolyc04g064800.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52552029
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.14e-16C3H family protein