PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen04g026740.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C3H
Protein Properties Length: 837aa    MW: 94248.8 Da    PI: 7.0905
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen04g026740.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.58.4e-07161181526
                       --SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                        Cr+fa  G C++G++C F H+
  Sopen04g026740.1 161 VCRNFAV-GNCRRGSQCWFVHP 181
                       7******.*************9 PP
2zf-CCCH18.53.6e-06246266526
                       --SGGGGTS--TTTTT-SS-SS CS
           zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                        Cr+f + G C+ G++C+F+H+
  Sopen04g026740.1 246 TCRNFVK-GDCRWGASCRFSHD 266
                       6******.*************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.2E-5157182IPR000571Zinc finger, CCCH-type
PfamPF006422.0E-4160181IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-4160180IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.225161183IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.047241268IPR000571Zinc finger, CCCH-type
SMARTSM003560.032241267IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-4247266IPR000571Zinc finger, CCCH-type
SMARTSM003560.96292317IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.432292318IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 837 aa     Download sequence    Send to blast
MGENAKERKS LWDAEEESPN SPKYEEWGPP KADNSWQFKS RSGWSSGDNV TGIEDLRKDN  60
YHYKSTSPAF ERQSNSHSPD NGRAQSRRYV GRARSRSRGR GEGRSRSRSR GRDKFRTRSR  120
SRSRDKGSMR VQNRSRSPDN SKRDPYASTD RRTGLHIYSK VCRNFAVGNC RRGSQCWFVH  180
PDAAIHRDGG NLEDNLSERL GSRPERGHIS RYNDSEGPGY QSRDKLPYLH NLEDELHRNR  240
SRGRITCRNF VKGDCRWGAS CRFSHDSPSG DNYEKGTQSE SFNYVQGNQA TRTGKSLCEY  300
FAAGKCYKDN CKFSHDATSR NHEIRPSNDN SGHRFDGTNI WLDGPKWDNE TRPSELVKAS  360
GWDESVVRTD TAIIVLTDGT NEKPDHHFEN KNKAWEIEPQ FINSDTERGV SPHRGSASHL  420
NALNITESPV TQSFANAQDL HLISQASDLN LERASIHVLG HSSNQGASEI VLSTTTTQPY  480
GSAESFVQPH GLTKENIART LGSNVVNEFM NDRDGVHHVR LPGQSFSGTG FGMSSEHSAV  540
LNETHQEENV FLPIPSTGHN KIEALGTPEM LDFKVPQYLT VTGEQVHQME TSPASMTKKL  600
EEGQRETQLQ SVLNPCGSSG MLPSNPISAL VHALYGQTIP EMRVPDNYHP PDGLELNTSG  660
NIKLPPDNSF YLYGDSNKVS MDQMNQTSTV DPELGNNDQI DEVKKQKNEL VDVDEKDKLA  720
LEESKNVEEN DHPGAMNLHG KVEEGSGNND EKVMRLFKNA LIEFVKEILK PIWKEGKMSR  780
EVHKTIVKKV VDKVIGSIQG EQVAKTQEDI EEYLSRSKPK ITKLVQAYVE WFMKNEV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1115123RTRSRSRSR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027772165.10.0zinc finger CCCH domain-containing protein 38-like
TrEMBLA0A3Q7G6P50.0A0A3Q7G6P5_SOLLC; Uncharacterized protein
STRINGSolyc04g064770.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA52552029
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.12e-14C3H family protein