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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen04g025630.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 164aa MW: 18889.7 Da PI: 6.7825 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 44.5 | 1.9e-14 | 15 | 63 | 1 | 49 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+ien+ +tfskRr+g+ KKA+EL Cd+++ ++++s+ gk + + Sopen04g025630.1 15 KKIENEDALLTTFSKRREGLYKKASELVRECDVDIGIMMISPAGKPHSF 63 689*****************************************98876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 20.605 | 7 | 67 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.4E-20 | 7 | 66 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 5.89E-22 | 8 | 78 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-11 | 9 | 29 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 3.2E-19 | 16 | 63 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-11 | 29 | 44 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.0E-11 | 44 | 65 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence Send to blast |
MEGKKTKGRQ KIPIKKIENE DALLTTFSKR REGLYKKASE LVRECDVDIG IMMISPAGKP 60 HSFFHPTLDA IVTRFQNPDM QLSQGILLDT ITARNKVNEL KNRLEELDAV EDATIARTTF 120 YDQMAEIRQK GWWESIENLN ADEVTIFDAW LSDTCSKMCH RLKQ |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975443 | 0.0 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015072745.1 | 1e-121 | agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A3Q7G665 | 1e-115 | A0A3Q7G665_SOLLC; Uncharacterized protein | ||||
STRING | Solyc04g056740.1.1 | 1e-116 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA382 | 20 | 138 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36590.1 | 2e-25 | M-type_MADS family protein |