PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Sopen04g025470.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

bHLH

Protein Properties

Length: 223aa MW: 26137.1 Da PI: 8.0261

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen04g025470.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	23.6	9.6e-08	66	115	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +++ h +Er RR+++ + +++Lr++lP ++K s + ++Av+ Ik+L Sopen04g025470.1 66 KKVLHRDVERHRRQEMSNLYATLRSHLPYI----KGKRSLPDDMQEAVNQIKNL 115 6788************************96....47888888888888888877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.01E-10	63	128	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.56E-5	63	120	No hit	No description
PROSITE profile	PS50888	12.189	65	115	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	7.7E-5	66	115	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.2E-6	67	130	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence Send to blast
MDCLSEIFSS KKIKDHDQQQ LIQIPSTPCQ PHHQDLPTND PNYKRKRSIS DHKERDSLTR 60 KNSVQKKVLH RDVERHRRQE MSNLYATLRS HLPYIKGKRS LPDDMQEAVN QIKNLENNIK 120 ELEIKRKKLE DLVLCSSKED KHFGDYVKIN LCDCGVEILI NERIPLSRVL EELVKRQLNV 180 VSCVSTKVDE RLLHRIQIEE SDVSCMCMDG LEQKLAEMIV FHS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975443	1e-174	HG975443.1 Solanum pennellii chromosome ch04, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015073213.1	1e-161	transcription factor bHLH118-like
TrEMBL	M1APG9	1e-132	M1APG9_SOLTU; Uncharacterized protein
STRING	PGSC0003DMT400027293	1e-133	(Solanum tuberosum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA598	24	109

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G51790.1	6e-28	bHLH family protein