PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen04g022770.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | ERF | ||||||||
Protein Properties | Length: 1027aa MW: 114878 Da PI: 7.547 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 60.4 | 4.3e-19 | 853 | 902 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr ++ +g+W+AeIrdp+ + +r++lg+f+tae+Aa+a+++a+++++g Sopen04g022770.1 853 RYRGVRERP-WGKWAAEIRDPY----KaARVWLGTFDTAEGAARAYDEAALRFRG 902 69****888.**********76....35************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF14244 | 2.0E-15 | 28 | 71 | IPR029472 | Gag-polypeptide of LTR copia-type |
Pfam | PF14223 | 1.4E-8 | 85 | 231 | No hit | No description |
Pfam | PF07727 | 6.7E-36 | 550 | 660 | IPR013103 | Reverse transcriptase, RNA-dependent DNA polymerase |
SuperFamily | SSF56672 | 7.56E-6 | 550 | 649 | No hit | No description |
CDD | cd09272 | 8.11E-27 | 688 | 749 | No hit | No description |
SuperFamily | SSF54171 | 4.38E-21 | 853 | 911 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 5.0E-36 | 853 | 916 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 6.0E-12 | 853 | 902 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.32E-33 | 853 | 912 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.6E-31 | 853 | 911 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.422 | 853 | 910 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-10 | 854 | 865 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-10 | 876 | 892 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1027 aa Download sequence Send to blast |
MAVDVSNEAA VAPSHSIEID HYHPLYLHPS DTSGSFLVSI QLTGPENYAI WSRSMRLALL 60 GKSKVSFVDG KHTREAFLSS LHDLWEKCNA IVLSWIINSI RKELLSSVIY ALNASKVWSN 120 LKERFDKVDG SRIHFLHTEI HSMSQGTSTV SDYFSRLREC WDKFDAIMSC PSCNCPESRK 180 YMQHFDYQRL LQFLTGLNES YAPSRSQILM MTPTPTINQA YFMVISEESQ RSLGKSVQNL 240 NINEGAAFYT SKGNFKPNSG GSGVQFRPST GQGHPEHNRS GFYIGHGNAA NFVNKHENPS 300 DMDGYAVNFS NALGTSSQSS HPSAPYFTPE QYNQILQMIG QNSETSGTAL SAGYVTSLKK 360 SGKFAPRSVP AVFLGYYLTR KGYKMYLLEE KSFTISRDVV FTEDVFFQHL STTFPPIFSP 420 PLCSTQYRPA ESIYVPHDHD SPPHALEVNP SIPPEAALVS VSTSVEPVRK SNRIPKPPIW 480 MKDYIYPTRT NVSCHFPISN YVNYDQISDS YISALAAYSA ILEPTSYSEA SSDPKWIAAM 540 QSQIAALMDN STWSIVDLPS GKSPIGCKWV YKIKHKANGE VERYKTRLVA KGFNQKEGLD 600 YTGTFSPISK TVIVQSVVAL AAAKKWFIYQ MDVHNAFLQG DIFEEVLSQF MHKPNQSHME 660 AALRVVRYVK AEPGFGLLMP SESSGKLVAY CDSYWGGCLE YRRSVTGYTV KFSDALISWK 720 SKKQETVARS SAEAEFRAMA SPVAEITWLE GNINREEEMS VMVSALTHVV VGNHHSENIE 780 NHHQNNTLIS RGVGEKRGRD EVLLHETNSS HMILSSGGEG SSIRTTREAT LIYTNSTNNS 840 IIDESGNNQV RGRYRGVRER PWGKWAAEIR DPYKAARVWL GTFDTAEGAA RAYDEAALRF 900 RGSKAKLNFP ENVTLLVPSS IQQTLYSSPD PIVSPYRSNF IIGHTSRELE PILHTNPSNF 960 IEHSSTYQEP IAHTSSLYRS NFIERNHHMV QQEPYFQAGS TSRGSDFHQT TNSSNSSNYD 1020 HPSSSSG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 1e-23 | 854 | 913 | 3 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HG975443 | 0.0 | HG975443.1 Solanum pennellii chromosome ch04, complete genome. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015072692.1 | 0.0 | uncharacterized protein LOC107016883 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50080.1 | 3e-25 | ethylene response factor 110 |