PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Sopen04g020660.1

Organism

Solanum pennellii

Taxonomic ID

28526

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon

Family

LBD

Protein Properties

Length: 165aa MW: 18786.4 Da PI: 5.9907

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sopen04g020660.1	genome	spenn	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	136.5	9.9e-43	13	112	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +CaaCk+lrr+C+++Cvlapyfp ++p kf ++h++FGasn++k+l++lpe++reda+ss+vyeA+ar+rdPvyG++++i +lq+q+++l+a+ Sopen04g020660.1 13 PCAACKILRRRCVEKCVLAPYFPPTHPLKFTIAHRVFGASNIIKMLQELPEDQREDAVSSMVYEANARIRDPVYGCAAIICQLQKQISELQAD 105 7******************************************************************************************** PP DUF260 94 lallkee 100 l++++ e Sopen04g020660.1 106 LVKAQVE 112 *999865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.728	12	113	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	9.1E-43	13	110	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 165 aa Download sequence Send to blast
MEDKSEYSCP HHPCAACKIL RRRCVEKCVL APYFPPTHPL KFTIAHRVFG ASNIIKMLQE 60 LPEDQREDAV SSMVYEANAR IRDPVYGCAA IICQLQKQIS ELQADLVKAQ VEIMNVQTQN 120 TNLVALICTE MTQNQENNDH QQAYGNSNTC LEDNNVYAPW KSLWT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-41	13	115	11	113	LOB family transfactor Ramosa2.1
5ly0_B	2e-41	13	115	11	113	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HG975443	0.0	HG975443.1 Solanum pennellii chromosome ch04, complete genome.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015073099.1	1e-122	LOB domain-containing protein 1-like
Swissprot	Q9LQR0	6e-66	LBD1_ARATH; LOB domain-containing protein 1
TrEMBL	A0A3Q7G4M5	1e-118	A0A3Q7G4M5_SOLLC; Uncharacterized protein
STRING	Solyc04g050010.1.1	1e-119	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA43	24	669

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07900.1	3e-68	LOB domain-containing protein 1