 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Sopen04g017230.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
| Family |
Trihelix |
| Protein Properties |
Length: 314aa MW: 35269.4 Da PI: 6.7329 |
| Description |
Trihelix family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sopen04g017230.1 | genome | spenn | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | trihelix | 89.5 | 3.8e-28 | 32 | 126 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84
rWt+qe+l+Li++++ +e+r+rrg+ + +p+W++vs++++++g++r+p+qC+++w+nl++++kkike+e++ ++e+ s +++ ++
Sopen04g017230.1 32 RWTRQEILVLIQGKKVTENRIRRGRtgvvelgspQVEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDFKKIKEWESQIKEETDSFWVMRND 124
8**********************97777888888**********************************************9999999999999 PP
trihelix 85 le 86
l+
Sopen04g017230.1 125 LR 126
86 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated |
| GO:0050777 | Biological Process | negative regulation of immune response |
| GO:0071219 | Biological Process | cellular response to molecule of bacterial origin |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0042803 | Molecular Function | protein homodimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 314 aa
Download sequence Send
to blast |
MKLERLTLIP STDSDGRLNG ADDSNKVPRL PRWTRQEILV LIQGKKVTEN RIRRGRTGVV 60
ELGSPQVEPK WASVSSYCKR HGVNRGPVQC RKRWSNLAGD FKKIKEWESQ IKEETDSFWV 120
MRNDLRRDKK LPGFFDREVY DILDRGSGDA DAHEEGGLVL ALGSQVLFDS GKSAASGDDA 180
LFSDFEPDET PHKPINDPPI PTPISEQQHQ PLSQVSPTQA GTSQPTTREP DIGSGHEGRK 240
RKKSESDADD EEARSVQHHL VRALERNGKL VSSQLEAQNM QFEQDREQRK DHVDNLVAVL 300
TKLADALGRI ADKL
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269|PubMed:25770109}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | BT014241 | 0.0 | BT014241.1 Lycopersicon esculentum clone 133441F, mRNA sequence. |
