PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen04g007970.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family NAC
Protein Properties Length: 274aa    MW: 31330.7 Da    PI: 9.8179
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen04g007970.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM27.77.5e-092414816128
               NAM  16 veyLkkkvegkkleleev.ikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglk 103
                       ++yL k v gk+++ e++ i++vd    i  + P ++  ++++++k++ f ++ ++k++ +   ++  + g+Wk   k k++++++++++g  
  Sopen04g007970.1  24 MNYLVKYVIGKSFPYEHTvIEDVDevygIRVYSPLQILGTTQGTKKNTRFIITFQNKQNCKVFISKD-APGFWKPNPKIKSIFDSNKKHIGNI 115
                       489*********777554488875544477789*999866666666676777666766666666665.56***************99999998 PP

               NAM 104 ktLvfy........kgrapkgektdWvmheyrl 128
                       k+  +y        ++++++ +k++W + ey l
  Sopen04g007970.1 116 KISWYYyydtkngrRKSSKRLKKSEWHIREYYL 148
                       8877776898866555666778*********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100510.48610171IPR003441NAC domain
SuperFamilySSF1019414.97E-1124169IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MEKSGSSKVT DNGGCSKALD KKMMNYLVKY VIGKSFPYEH TVIEDVDEVY GIRVYSPLQI  60
LGTTQGTKKN TRFIITFQNK QNCKVFISKD APGFWKPNPK IKSIFDSNKK HIGNIKISWY  120
YYYDTKNGRR KSSKRLKKSE WHIREYYLSS KYLPPNKVER EDVILTMMMK TKEQKGGNSN  180
NNNQEKSDKA MQIIQSPEDG HVQLDHSNGD AVEMSVENQL TMQSLQSLQL SDKAMQIIQS  240
PQGGQVQLDH KNGDTVGMSV ENQLIMQSLQ SLQL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754430.0HG975443.1 Solanum pennellii chromosome ch04, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027772134.10.0uncharacterized protein LOC107016469, partial
TrEMBLA0A3Q7G0G50.0A0A3Q7G0G5_SOLLC; Uncharacterized protein
STRINGSolyc04g015960.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA14078510