PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen04g004570.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | NAC | ||||||||
Protein Properties | Length: 301aa MW: 34783.2 Da PI: 7.9072 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 165.9 | 1.5e-51 | 13 | 137 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lp+GfrFhPtd+elv++yL++k++g+++ + ++i+e+d+yk++Pw+Lp+k+ +ekewyfFs+rd+ky++g+r+nra+ +gyWkatg dk+v Sopen04g004570.1 13 LPAGFRFHPTDDELVQHYLCRKCAGQSIAV-SIIAEIDLYKFDPWQLPEKALYGEKEWYFFSPRDRKYPNGSRPNRAAGAGYWKATGADKPVG 104 799*************************99.89***************8777889*************************************9 PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++ g+kk Lvfy g+ap+g kt+W+mheyrl Sopen04g004570.1 105 K--PKTLGIKKALVFYAGKAPRGIKTNWIMHEYRL 137 8..778***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.66E-61 | 9 | 163 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.351 | 13 | 163 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.7E-27 | 14 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 301 aa Download sequence Send to blast |
MNKGANGNQQ LELPAGFRFH PTDDELVQHY LCRKCAGQSI AVSIIAEIDL YKFDPWQLPE 60 KALYGEKEWY FFSPRDRKYP NGSRPNRAAG AGYWKATGAD KPVGKPKTLG IKKALVFYAG 120 KAPRGIKTNW IMHEYRLANV DRSAGKNNNL RLDDWVLCRI YNKKGTLEKH YNVDNKETTS 180 FGEFDEEIKP KILTTQLAPM PPRPRSTPAN DYFHFESSES MTRMHTTNSS SGSEHVLSPC 240 DKEVQSAPKW DEDHRNTLDF QLNYLDGLLN EPFETQMQQQ ICNFDQFNNF QDMFLYMQKP 300 Y |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 9e-86 | 1 | 169 | 3 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KC447281 | 0.0 | KC447281.1 Solanum pimpinellifolium cultivar LA1589 NAC domain protein (NAC1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015071719.1 | 0.0 | NAC domain-containing protein 2 | ||||
Swissprot | Q39013 | 1e-122 | NAC2_ARATH; NAC domain-containing protein 2 | ||||
TrEMBL | M9TNM6 | 0.0 | M9TNM6_SOLPI; NAC domain protein | ||||
TrEMBL | Q6RH27 | 0.0 | Q6RH27_SOLLC; NAC domain protein | ||||
STRING | Solyc04g009440.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1239 | 24 | 81 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01720.1 | 1e-122 | NAC family protein |