|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Sopen04g002250.1 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
Family |
ERF |
Protein Properties |
Length: 350aa MW: 39243.8 Da PI: 4.6001 |
Description |
ERF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sopen04g002250.1 | genome | spenn | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 58.8 | 1.3e-18 | 106 | 156 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkleg 55
s+ykGVr++k +g+W+AeIrd + + +r++lg++ ta eA +a++ r+++e
Sopen04g002250.1 106 SKYKGVRQRK-WGKWAAEIRDpF-----KgRRVWLGTYNTAVEASRAYELKRLEFET 156
89*******9.**********55.....45***********************9885 PP
|
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 350 aa
Download sequence Send
to blast |
MLKPLSSKFE NLGRNMKKKV DTNRLVRKIR IVCNDPDATD DSSDDDSRCK RFVREIKLQI 60 GNSFNLRKAS EIECSFQDSN NGEKKTKKEG FVKPLIQPRP AGGLLSKYKG VRQRKWGKWA 120 AEIRDPFKGR RVWLGTYNTA VEASRAYELK RLEFETRAKI SRTNVSKESS GSMVSEYQNQ 180 SQNVASGVSE DYAESSVSRT SHSLSSSSVL ELDTLTSVSA SAPILRLNGL NDNEKASNVA 240 PLEANVVEQE VPELAMMEET LPLSQIGESM DLDLELESFL IGADDFNQHL DEFVVNDFED 300 PPVYLIEGDE QLPTGLPDFD DFNFDGYNES FSWMDDAPRT NGTPLNIACP
|