![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sopen03g041270.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 386aa MW: 42800.2 Da PI: 4.8651 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.8 | 6.4e-19 | 115 | 164 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r+++ +g+W+AeIrdp++ r++lg+f taeeAaka++ +++++g Sopen03g041270.1 115 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAAKAYDIEARRIRG 164 69*******.**********954...4************************998 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 7.87E-32 | 115 | 173 | No hit | No description |
PROSITE profile | PS51032 | 23.907 | 115 | 172 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.24E-21 | 115 | 174 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-31 | 115 | 174 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.8E-36 | 115 | 178 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.7E-11 | 116 | 162 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-11 | 116 | 127 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.0E-11 | 138 | 154 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0070483 | Biological Process | detection of hypoxia | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005886 | Cellular Component | plasma membrane | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 386 aa Download sequence Send to blast |
MCGGSIISDY IDPSRTSRRL TAELLWGRFD LGKKQKNPNN YHSKAKHLRS EVVDDFEADF 60 QDFKELSDDE DVQVDVKPFA FSASKHSTGS KSLKTVDSNK DAAADKSSKR KRKNQYRGIR 120 QRPWGKWAAE IRDPRKGVRV WLGTFNTAEE AAKAYDIEAR RIRGKKAKVN FPDEAPAPAS 180 RHAVKVNPQK VLPEESLNSF QSDSAIMNSV EDDHYDSFGF FEEKPMTKQY GYENGSSASA 240 DTGFGSFVPS AGGDIYFNSD VGSNSFECSD FGWGEPCSRT PEISSVLSAA IECNEAQFVE 300 DANPQKKLKS CTNNPVADDG NTVTMVPEEL PAFEPQMNFF HLPYMEGNWD ASGGNFLNTS 360 ATQNGGENAM DLWSFDDVPS LMGGIF |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 4e-21 | 115 | 172 | 2 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00204 | DAP | Transfer from AT1G53910 | Download |
![]() |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT013179 | 0.0 | BT013179.1 Lycopersicon esculentum clone 134255R, mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_015070539.1 | 0.0 | ethylene-responsive transcription factor RAP2-12-like isoform X3 | ||||
TrEMBL | A0A2K8BHC6 | 0.0 | A0A2K8BHC6_SOLLC; RAP2.2-2 transcription factor | ||||
STRING | Solyc03g123500.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1446 | 24 | 66 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G53910.3 | 6e-66 | related to AP2 12 |