PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen03g040470.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family C2H2
Protein Properties Length: 541aa    MW: 59174.3 Da    PI: 8.9997
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen03g040470.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.5e-0598120123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C++C+k F r  nL+ H r H
  Sopen03g040470.1  98 FVCEICNKGFQRDQNLQLHRRGH 120
                       89*******************88 PP
2zf-C2H213.30.00026174196123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       +kC++C+k++  +s+ k H +t+
  Sopen03g040470.1 174 WKCEKCSKRYAVQSDWKAHSKTC 196
                       58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.8E-597120IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.15E-697120No hitNo description
PROSITE profilePS5015710.94998120IPR007087Zinc finger, C2H2
SMARTSM003550.01798120IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280100120IPR007087Zinc finger, C2H2
SMARTSM00355250139169IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.8E-4162195IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.15E-6169194No hitNo description
SMARTSM00355130174194IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MMMKDLMNQQ AQVPGVVMEE NMSNLTSASG EASVSSSNRN DNNNNNIYPH HQYNFAPPNQ  60
QTQPAQQIKK KRNQPGNPDP EAEVIALSPK TLMATNRFVC EICNKGFQRD QNLQLHRRGH  120
NLPWKLKQRT SKEIRKKVYV CPETSCVHHD PARALGDLTG IKKHFCRKHG EKKWKCEKCS  180
KRYAVQSDWK AHSKTCGTKE YRCDCGTLFS RRDSFITHRA FCDALAEESA RAITGNPILP  240
SQAGSSTSQM NFQFQPFNHE IPVTFSLKKE QQTGFNLRPE IPPWLLVGGG PGPGPGPGPP  300
QPQPIGLSSS IFQSSRFSDQ DYTQSHHQQQ QGFMNPNPSL SGPTSGAMAS PHISATALLQ  360
KAAQMGATMS NKASTVSAVS SGPGPAMLMR PHQIHVSATA TAAESVSNAT DFGLNLSSRE  420
DLTTGFFNSL ASYGNKAANP SVVITPVTIP LSTAPHPTPS SLQDMMNSFS SVNPTGFEGS  480
NFEDPFSILN PKNNNGSVND DMTKDFLGLR PLSHSDIFNI AGLVNSTPNE TQSQNHKTWQ  540
S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-35170231364Zinc finger protein JACKDAW
5b3h_F2e-35170231364Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1124136KLKQRTSKEIRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00206DAPTransfer from AT1G55110Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0136590.0BT013659.1 Lycopersicon esculentum clone 132478R, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015070300.10.0protein indeterminate-domain 7-like
RefseqXP_015070301.10.0protein indeterminate-domain 7-like
SwissprotQ8H1F51e-128IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLA0A3Q7FXF10.0A0A3Q7FXF1_SOLLC; Uncharacterized protein
STRINGSolyc03g121660.2.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA10324350
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.11e-114indeterminate(ID)-domain 7
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]