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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sopen03g039740.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 836aa MW: 92006.4 Da PI: 6.4668 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59 | 8.1e-19 | 16 | 74 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+l++ +++ps +r++L +++ +++ +q+kvWFqNrR +ek+ Sopen03g039740.1 16 KYVRYTPEQVEALERLYHDCPKPSSMRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 74 5679*****************************************************97 PP | |||||||
2 | START | 173.6 | 1.2e-54 | 160 | 368 | 2 | 205 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT..EEEE CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg..galq 92 +aee+++e+++ka+ ++ Wv+++ +++g++++ +++ s++++g a+ra+g+v +++ v+e+l+d++ W ++++ +e+l+v+ ++ g+++ Sopen03g039740.1 160 IAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIIAISHGCTGVAARACGLVGLEPT-RVSEILKDRPSWYRDCRVVEVLNVLPTAngGTIE 251 789*******************************************************.9999999999****************9999**** PP EEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE--SSXXHHHH CS START 93 lmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlkgrlphwll 181 l +++l+a+++l+p Rdf+ +Ry+ + +g++v++++S+ ++q+ p+ +++vRae lpSg+li+p+++g+s +++v+h++l++++++++l Sopen03g039740.1 252 LLYMQLYAPTTLAPaRDFWLLRYTTVMDDGSLVVCERSLGNTQNGPSmppVQNFVRAEILPSGYLIRPCEGGGSIIHIVDHMNLEAWSVPEVL 344 ********************************************99988899***************************************** PP HHHHHHHHHHHHHHHHHHTXXXXX CS START 182 rslvksglaegaktwvatlqrqce 205 r+l++s+++ ++kt+va+l+++++ Sopen03g039740.1 345 RPLYESSAVLAQKTTVAALRYLRQ 368 *******************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.354 | 11 | 75 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.2E-16 | 13 | 79 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 8.55E-17 | 15 | 78 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 7.95E-17 | 16 | 76 | No hit | No description |
Pfam | PF00046 | 2.2E-16 | 17 | 74 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-18 | 18 | 74 | IPR009057 | Homeodomain-like |
CDD | cd14686 | 1.37E-6 | 68 | 107 | No hit | No description |
PROSITE profile | PS50848 | 26.27 | 150 | 378 | IPR002913 | START domain |
CDD | cd08875 | 3.41E-75 | 154 | 370 | No hit | No description |
SMART | SM00234 | 1.0E-42 | 159 | 369 | IPR002913 | START domain |
Gene3D | G3DSA:3.30.530.20 | 8.1E-23 | 159 | 364 | IPR023393 | START-like domain |
SuperFamily | SSF55961 | 2.88E-37 | 159 | 371 | No hit | No description |
Pfam | PF01852 | 1.8E-52 | 160 | 368 | IPR002913 | START domain |
Pfam | PF08670 | 1.2E-49 | 692 | 835 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0010014 | Biological Process | meristem initiation | ||||
GO:0010075 | Biological Process | regulation of meristem growth | ||||
GO:0010087 | Biological Process | phloem or xylem histogenesis | ||||
GO:0048263 | Biological Process | determination of dorsal identity | ||||
GO:0080060 | Biological Process | integument development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 836 aa Download sequence Send to blast |
MASCKDGKSV VLDNGKYVRY TPEQVEALER LYHDCPKPSS MRRQQLIREC PILSNIEPKQ 60 IKVWFQNRRC REKQRKEASR LQSVNRKLTA MNKLLMEEND RLQKQVSQLV YENGYFRRQS 120 HSTPLATKDT SCDSVVTSGQ HHLTSQHPPR DASPAGLLSI AEETLTEFLS KATGTAVEWV 180 QMPGMKPGPD SIGIIAISHG CTGVAARACG LVGLEPTRVS EILKDRPSWY RDCRVVEVLN 240 VLPTANGGTI ELLYMQLYAP TTLAPARDFW LLRYTTVMDD GSLVVCERSL GNTQNGPSMP 300 PVQNFVRAEI LPSGYLIRPC EGGGSIIHIV DHMNLEAWSV PEVLRPLYES SAVLAQKTTV 360 AALRYLRQIA QEVSQTNVTN WGRRPAALRA LSQRLSRGFN EALNGIADEG WSMLDSDGMD 420 DVTILVNSSP DKLMGLNLPF ANGFSPMSNA VMCAKASMLL QNVPPAILLR FLREHRSEWA 480 DNNIDAYAAA AIKVGPCSLP GARVGNFGGQ VILPLAHTVE HEELLEVIKL EGHSPEDAIM 540 PRDMFLLQLC SGMDENAVGT CAELVFAPID ASFADDAPLL PSGFRIISLE SGKEASSPNR 600 TLDLTSALET GPAENKAAND LHTSGGSSRS VMTIAFQFAF ESHMQESVAS MARQYVRSII 660 SSVQRVALAL SPSHLGSHGG LRLPLGTPEA HTLARWICQS YRCFLGVELL KLNTDQGSES 720 ILKSLWHHSD AIICCSAKAL PVFTFANQAG LDMLETTLVA LQDITLEKIF DDHGKKNLCT 780 EFPQIMQQGF ACLQGGICLS SMSRPISYER AVAWKVMNEE DTAHCICFMF VNWSFV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the regulation of meristem development to promote lateral organ formation. May regulates procambial and vascular tissue formation or maintenance, and vascular development in inflorescence stems. {ECO:0000269|PubMed:15598805, ECO:0000269|PubMed:15705957, ECO:0000269|PubMed:16617092}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00200 | DAP | Transfer from AT1G52150 | Download |
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Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. Repressed by miR165 and miR166. {ECO:0000269|PubMed:15773855, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:16617092, ECO:0000269|PubMed:17237362}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JQ686925 | 0.0 | JQ686925.1 Nicotiana tabacum cultivar SR1 homeobox-leucine zipper protein ATHB-15-like protein (HB15) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004235650.1 | 0.0 | homeobox-leucine zipper protein ATHB-15 | ||||
Refseq | XP_015070892.1 | 0.0 | homeobox-leucine zipper protein ATHB-15 | ||||
Swissprot | Q9ZU11 | 0.0 | ATB15_ARATH; Homeobox-leucine zipper protein ATHB-15 | ||||
TrEMBL | M0ZRW9 | 0.0 | M0ZRW9_SOLTU; Uncharacterized protein | ||||
STRING | Solyc03g120910.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA457 | 24 | 140 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G52150.1 | 0.0 | HD-ZIP family protein |
Publications ? help Back to Top | |||
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