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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Sopen03g039720.1 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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| Family |
GATA |
| Protein Properties |
Length: 354aa MW: 38408.3 Da PI: 6.6926 |
| Description |
GATA family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sopen03g039720.1 | genome | spenn | View CDS |
|
| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GATA | 53.8 | 2.6e-17 | 243 | 277 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
C +C + kTp+WR gp g+ktLCnaCG++y++ +l
Sopen03g039720.1 243 CLHCASDKTPQWRTGPLGPKTLCNACGVRYKSGRL 277
99*****************************9885 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0008270 | Molecular Function | zinc ion binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 354 aa
Download sequence Send
to blast |
MEASDLFVSG FFSHAGDEQI PNNINNNINN NCNNFSVDDL LVIPKEDDVM ADAFFNSITG 60
NSADSSTVTV VDSCNSSVSG GDGQFNGNLS GRSFTDAPFP NSELCVPFDD LAELEWLSNF 120
VEESFSSDDV QNLQFIPVAN INSSSTITTD SSSSATTFST GPNSPPAFPA DTSVPGKARS 180
KRSRAAPCDW SSRLQLLLSP ATSSSESNNI SPPSVNNTTF ATAKATKAPS KKRESVETPG 240
RKCLHCASDK TPQWRTGPLG PKTLCNACGV RYKSGRLVPE YRPASSPTFI SARHSNSHRK 300
VLELRRQKDL QRHQAHHHQH QLLSQPTIFG VSNGGDEFLL HHHQNCGPNF RHLI
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