PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sopen03g037140.1
Organism
Solanum pennellii
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
Family Trihelix
Protein Properties Length: 332aa    MW: 37618.8 Da    PI: 5.383
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sopen03g037140.1genomespennView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix72.67.1e-2336127183
          trihelix   1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfd 83 
                       rWt+qe+l+Li++++  eer  rg+         + +p+W++vs+++r++g  r+p+qC+++w+n+  ++kkik++e +    s+s +   +
  Sopen03g037140.1  36 RWTRQETLVLIQGKKIAEERAHRGRkstsvfgsdKPEPKWDSVSSYCRQHGADRGPVQCRKRWSNMISDFKKIKTWETQAYGSSESYWIISN 127
                       8**************999999987556677777699******************************************98766666776555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.14329102IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.601.2E-535103IPR009057Homeodomain-like
PfamPF138376.1E-1235116No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MSTLGSTEMN ENAATLADGQ QKLTEEGKSK TPRHSRWTRQ ETLVLIQGKK IAEERAHRGR  60
KSTSVFGSDK PEPKWDSVSS YCRQHGADRG PVQCRKRWSN MISDFKKIKT WETQAYGSSE  120
SYWIISNDLR REKRLPGSFD REVYNVLDGK EFTAEAYQLA LVTITTDEKL DYGVETVEEE  180
EAEEGEEEND NVSHTGEYTM EDDVMHPAAE EVGSSPLKEH IVIDKKAKSI PSPVPRSGTA  240
EGEQPGPDFW SSPMYKDRVK KRRLSPDGCI DSNLGYKLLK TLERNTNTLH SQLDAQMGNR  300
QREMEQQKEQ TNSLIDVLNK VADAVARVAD KM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHG9754420.0HG975442.1 Solanum pennellii chromosome ch03, complete genome.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015070286.10.0trihelix transcription factor ASR3-like
TrEMBLM1B4650.0M1B465_SOLTU; Uncharacterized protein
STRINGSolyc03g118230.1.10.0(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA17862460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.17e-61Trihelix family protein