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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sopen03g036040.1 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
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Family |
ERF |
Protein Properties |
Length: 162aa MW: 18696.9 Da PI: 7.4382 |
Description |
ERF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sopen03g036040.1 | genome | spenn | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 59.1 | 1e-18 | 7 | 54 | 2 | 53 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53
+y+GVr+++ +g+Wv+eIr+ps ++r++lg++ t e+Aa+a+++a++ +
Sopen03g036040.1 7 KYRGVRQRH-WGSWVSEIRHPSL---KTRIWLGTYETSEDAARAYDEAARLM 54
8*******9.**********944...5*********************9876 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 162 aa
Download sequence Send
to blast |
MSRPQQKYRG VRQRHWGSWV SEIRHPSLKT RIWLGTYETS EDAARAYDEA ARLMCGSTAR 60 TNFPYNATES SRFLSSALIA KLQRCNMTSL TATSRRPGKT RLEDKKENEI STLIRNRGDG 120 EERQSENASQ QYMKALEDEH IEQMIEELLD YGSIEMCSVP NE
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Functional Description ? help
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Source |
Description |
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AB889741 | 0.0 | AB889741.1 Solanum lycopersicum ERF52 mRNA for AP2/ERF transcription factor SlERF52, complete cds. |