 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
Sopen03g034840.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Solanoideae; Solaneae; Solanum; Lycopersicon
|
| Family |
NAC |
| Protein Properties |
Length: 331aa MW: 38159.1 Da PI: 8.5777 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Sopen03g034840.1 | genome | spenn | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 174.3 | 3.6e-54 | 19 | 145 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93
lppGfrFhPtdeel+++yL kkv + ++++ +i +vd++k+ePw+Lp k+k +ekewyfF+ rdkky+tg r+nrat++gyWkatgkdke++
Sopen03g034840.1 19 LPPGFRFHPTDEELITHYLSKKVVDMNFSA-IAIGDVDMNKIEPWELPWKAKIGEKEWYFFCVRDKKYPTGLRTNRATAAGYWKATGKDKEIF 110
79*************************999.88***************98999**************************************** PP
NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrle 129
+ +++lvg+kktLvfy+grap+gekt+Wv heyrle
Sopen03g034840.1 111 R-GRSLVGMKKTLVFYRGRAPRGEKTNWVTHEYRLE 145
*.999*****************************85 PP
|
| Sequence ? help Back to Top |
| Protein Sequence Length: 331 aa
Download sequence Send
to blast |
MMENFSASVK MDDQQQMELP PGFRFHPTDE ELITHYLSKK VVDMNFSAIA IGDVDMNKIE 60
PWELPWKAKI GEKEWYFFCV RDKKYPTGLR TNRATAAGYW KATGKDKEIF RGRSLVGMKK 120
TLVFYRGRAP RGEKTNWVTH EYRLEGRLSL NNLPKTVKND WVICRVFQKT TGGKKIHISG 180
LVRANSDENE MVNSVLPPLT DSSPSHVHCF SNYVTTQKNQ ENNMINSFNN SPNFPLLSNS 240
IDIFQRNSLP NSFTWNQNVP LQHNFPQPGS FPIQDPATLR NLLENYGQNI QHQSFKKETD 300
MISVSQETGI STDRNTEITS AQQDLDCFWT Y
|
| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 1e-55 | 12 | 175 | 10 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 1e-55 | 12 | 175 | 10 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 1e-55 | 12 | 175 | 10 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 1e-55 | 12 | 175 | 10 | 171 | NO APICAL MERISTEM PROTEIN |
| 4dul_A | 1e-55 | 12 | 175 | 10 | 171 | NAC domain-containing protein 19 |
| 4dul_B | 1e-55 | 12 | 175 | 10 | 171 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Repressed by the microRNA miR164. {ECO:0000269|PubMed:15294871, ECO:0000269|PubMed:17098808}. |
